Plant FIBer expression Database

Lus10020577 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT4G04190 275 / 4e-95 unknown protein
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10006268
[exp]
276 / 5e-96 AT4G04190 244 / 4e-84 unknown protein
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.009G146100
[exp]
256 / 8e-88 AT4G04190 261 / 4e-90 unknown protein
PFAM info
Representative CDS sequence
>Lus10020577 pacid=23172335 polypeptide=Lus10020577 locus=Lus10020577.g ID=Lus10020577.BGIv1.0 annot-version=v1.0
ATGTGTAATCTGGATTTGATTGCATCATCCACGGGATCGTTGGATGATTGGTTTTGTGCTGTCCTTGTTTTTCACTTGTTGCTTTCAGTTGATGCGCAGC
CAACCATGGAGGAAACTATCCTAGTTGGAGAGGACTTGATGCTGGGGCCTGCATCTCCTGTTATCCCAAAGGAAATTGCCTCTCATGTGCTTGAAGGTGT
CGAGTTGTGCGATGGAATCTTAAAGAACCTGTTCTTGTGCTTGCAAGTCAATGACATAGAACCTTTCTGTCAAGATGAGCTTTCTTTGTACAGAGAATGT
GCAGAAAAGCGGGACAAGCAACTAAGGCAACGGCTTCAAGATAGCGAACACAAGTTGGGGTTGTCAATGCCTTTGGATGAAGCAAAGGAGCGCGTTTCTC
AGCTCGAAGCAGAAGCCACAGCTTATGAGAGGCGGCTGATTCTTGCCAGTGGAGTTGAAGGAATTGAAGGATTCCGCCAAAGATGGAGCTTGCATGGCCG
TATGTCAGATACCAAGAGACGGCTAGAGGCTCTAAAACAAGGGATGGAAGGTAGAAATCAAGACTTAAAAAGGGATCAACCACCTCCTCCTCCACAGCCA
TCAGATCGCAAGAAATGGGGGCTCTGGTGA
AA sequence
>Lus10020577 pacid=23172335 polypeptide=Lus10020577 locus=Lus10020577.g ID=Lus10020577.BGIv1.0 annot-version=v1.0
MCNLDLIASSTGSLDDWFCAVLVFHLLLSVDAQPTMEETILVGEDLMLGPASPVIPKEIASHVLEGVELCDGILKNLFLCLQVNDIEPFCQDELSLYREC
AEKRDKQLRQRLQDSEHKLGLSMPLDEAKERVSQLEAEATAYERRLILASGVEGIEGFRQRWSLHGRMSDTKRRLEALKQGMEGRNQDLKRDQPPPPPQP
SDRKKWGLW

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT4G04190 unknown protein Lus10020577
[exp]
0 1
AT1G66590 ATCOX19-1 A. THALIANA CYTOCHROME C OXIDA... Lus10025812
[exp]
4.1 0.8099
AT3G54200 Late embryogenesis abundant (L... Lus10009831
[exp]
4.9 0.8539
AT5G06350 ARM repeat superfamily protein... Lus10004194
[exp]
7.7 0.8516
AT3G51270 protein serine/threonine kinas... Lus10013682
[exp]
9.4 0.8668
AT2G40660 Nucleic acid-binding, OB-fold-... Lus10034239
[exp]
9.5 0.8167
AT3G56510 RNA-binding (RRM/RBD/RNP motif... Lus10014585
[exp]
10.2 0.8332
AT3G51270 protein serine/threonine kinas... Lus10017941
[exp]
11.7 0.8508
AT3G53740 Ribosomal protein L36e family ... Lus10016501
[exp]
13.5 0.8343
AT2G34160 Alba DNA/RNA-binding protein (... Lus10002027
[exp]
15.3 0.8469
AT1G76010 Alba DNA/RNA-binding protein (... Lus10017255
[exp]
16.4 0.8305

Lus10020577 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.