Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27680 554 / 0 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G06690 92 / 3e-20 NAD(P)-linked oxidoreductase superfamily protein (.1) AT5G53580 66 / 1e-11 AtPLR1 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60680 58 / 3e-09 AGD2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60690 54 / 1e-07 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60710 52 / 2e-07 ATB2 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G60750 48 / 6e-06 NAD(P)-linked oxidoreductase superfamily protein (.1) AT1G04420 48 / 9e-06 NAD(P)-linked oxidoreductase superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006267 [exp] 572 / 0 AT2G27680 494 / 6e-175 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10020579 [exp] 82 / 9e-19 AT2G27680 111 / 2e-30 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10016327 [exp] 81 / 1e-16 AT1G06690 510 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10002744 [exp] 78 / 1e-15 AT1G06690 496 / 9e-177 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10010340 [exp] 56 / 3e-08 AT1G04420 606 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10028045 [exp] 53 / 1e-07 AT1G04420 286 / 2e-94 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10006105 [exp] 52 / 5e-07 AT1G60690 554 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10041272 [exp] 50 / 2e-06 AT1G60710 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Lus10037437 [exp] 50 / 2e-06 AT1G60690 571 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G146000 [exp] 569 / 0 AT2G27680 632 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207100 [exp] 92 / 1e-20 AT1G06690 526 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G055500 [exp] 92 / 3e-20 AT1G06690 557 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.005G207000 [exp] 91 / 4e-20 AT1G06690 589 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G167400 [exp] 67 / 4e-12 AT1G04420 612 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G006900 [exp] 67 / 7e-12 AT5G53580 556 / 0.0 pyridoxal reductase 1, NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.002G234201 [exp] 51 / 6e-07 AT1G60710 547 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.014G147700 [exp] 49 / 4e-06 AT1G60710 559 / 0.0 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.008G158300 [exp] 48 / 5e-06 AT1G60680 389 / 2e-135 NAD(P)-linked oxidoreductase superfamily protein (.1) Potri.015G042100 [exp] 47 / 2e-05 AT1G04420 294 / 4e-97 NAD(P)-linked oxidoreductase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00248 [flax] [poplar] Aldo_ket_red Aldo/keto reductase family
Representative CDS sequence Show only first row Show all	>Lus10020578 pacid=23172317 polypeptide=Lus10020578 locus=Lus10020578.g ID=Lus10020578.BGIv1.0 annot-version=v1.0 ATGGCTGAGTTCTTACTGCAACATCCATTGAGCAACTTTGCACTTAGTAGTACCAAACTGGTTAGGAGGAAAGCAGGTGAATCCAGAAGCTACGGCGTCG GCGTTAGGCCGCCATTACAATGCGTGATGAGTAAAGATGAGAGGAGGATTACGGTGAAGAACGGGAAGGATTCATTGGATATATGCAGGGTTGTGAATGG GATGTGGCAGACTAGTAGTGGTGGTTGGGGGAAGATTAAACTCGACAGTGCTGCTGATGCCATGATCAAACATGTCGATGCAGGATTGAATACGTTTGAT ATGGCTGATATATATGGTCCTGCTGAGGATTTGTATGGTATTTTCATCAACAGAGTTCGTAGAGAGCGTCCACCGGAGGTTTTGGAGCAGATTAGAGGAC TTACAAAGTGGGTGCCTCCACCTGTTAAGATGACGAGCAATTACGTGAGGGAGAACATCAACATTTCAAGGAAAAGAATGGACGTTCCGTGCTTGGATAT GCTTCAATTTCATTGGTGGGATTACTCGAATTCTGGTTACATTGATGCCCTTAAACACCTGACAGACTTGAAGGAAGAAGGTAAAATCAAGACTGTTGCA TTGACAAACTTCGACACGGAGAGGCTGCAAATAATTCTAGAAAATGGAATTCCAGTAGTGAGCAACCAGGTGCAACATTCTATAGTCGACATGCGCCCTC AGCAGAAGATGGCAGAGCTGTGTCAACTTACTGGAGTTAAACTTATAACGTATGGGACAGTAATGGGTGGGCTGTTGTCTGAGAAGTTCTTGGACACCAA CTTAAACATTCCTTTTGCTGGTCCTCCTTTAAACACTCCTTCCCTCCAGAAGTACAAACGAATGGTGGATGCATGGGGAGGATGGGGTCAGTTCCAAGTC TTACTCAAGACTCTCAAGAAAGTAGCCACCAAACATGGCGTCTCCATTCCTACTGTGGCAGTGAAGTACATACTAGATCAGCCAGAAGTAGCGGGGTCAA TGGTAGGGGTTCGGCTTGGGTTATCGGAGCATGTGAACGACTCGAACGCGGTGTTCTCTTTGGAACTGGACGAAGAGGACGTGGAGAGCATACGGGAAGT CAGCAAGAAAGGTAGGGACTTGATGGGCGTGATTGGAGATTGTGGTGATGAATACAGGCGTTGA
AA sequence Show only first row Show all	>Lus10020578 pacid=23172317 polypeptide=Lus10020578 locus=Lus10020578.g ID=Lus10020578.BGIv1.0 annot-version=v1.0 MAEFLLQHPLSNFALSSTKLVRRKAGESRSYGVGVRPPLQCVMSKDERRITVKNGKDSLDICRVVNGMWQTSSGGWGKIKLDSAADAMIKHVDAGLNTFD MADIYGPAEDLYGIFINRVRRERPPEVLEQIRGLTKWVPPPVKMTSNYVRENINISRKRMDVPCLDMLQFHWWDYSNSGYIDALKHLTDLKEEGKIKTVA LTNFDTERLQIILENGIPVVSNQVQHSIVDMRPQQKMAELCQLTGVKLITYGTVMGGLLSEKFLDTNLNIPFAGPPLNTPSLQKYKRMVDAWGGWGQFQV LLKTLKKVATKHGVSIPTVAVKYILDQPEVAGSMVGVRLGLSEHVNDSNAVFSLELDEEDVESIREVSKKGRDLMGVIGDCGDEYRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27680			NAD(P)-linked oxidoreductase s...		Lus10020578 [exp]	0	1
AT2G43560			FKBP-like peptidyl-prolyl cis-...		Lus10027115 [exp]	2.0	0.9566
AT1G54500			Rubredoxin-like superfamily pr...		Lus10019005 [exp]	3.2	0.9535
AT1G60000			RNA-binding (RRM/RBD/RNP motif...		Lus10023723 [exp]	3.5	0.9413
AT1G45230			Protein of unknown function (D...		Lus10009756 [exp]	4.5	0.9374
AT2G21530	FHA		SMAD/FHA domain-containing pro...		Lus10001966 [exp]	6.0	0.9386
AT3G26710		CCB1	cofactor assembly of complex C...		Lus10035119 [exp]	8.0	0.9292
AT4G13220			unknown protein		Lus10022819 [exp]	9.8	0.9165
AT5G45930		CHLI-2, CHLI2	magnesium chelatase i2 (.1)		Lus10015302 [exp]	10.4	0.9347
AT1G54780		AtTLP18.3, TLP1...	thylakoid lumen protein 18.3, ...		Lus10035346 [exp]	12.1	0.9313
AT5G46420			16S rRNA processing protein Ri...		Lus10004590 [exp]	12.8	0.9199

Compare expression of checked genes

Lus10020578 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.