Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G45490 481 / 7e-174 ATAUR3 ataurora3 (.1) AT4G32830 377 / 8e-133 ATAUR1 ataurora1 (.1) AT2G25880 377 / 1e-132 ATAUR2 ataurora2 (.1.2) AT5G10930 203 / 2e-62 CIPK5, SnRK3.24 SNF1-RELATED PROTEIN KINASE 3.24, CBL-interacting protein kinase 5 (.1) AT5G25110 202 / 1e-61 CIPK25, SnRK3.25 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) AT2G26980 194 / 1e-59 CIPK3, SnRK3.17 SNF1-RELATED PROTEIN KINASE 3.17, CBL-interacting protein kinase 3 (.1.2.3.4.5) AT1G30270 194 / 9e-59 PKS17, ATCIPK23, SnRK3.23, LKS1, CIPK23 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) AT2G25090 192 / 5e-58 CIPK16, SnRK3.18 SNF1-RELATED PROTEIN KINASE 3.18, CBL-interacting protein kinase 16 (.1) AT5G21326 189 / 2e-57 Ca2+regulated serine-threonine protein kinase family protein (.1) AT4G14580 186 / 4e-56 CIPK4, SnRK3.3 SNF1-RELATED PROTEIN KINASE 3.3, CBL-interacting protein kinase 4 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006266 [exp] 497 / 4e-180 AT2G45490 427 / 1e-152 ataurora3 (.1) Lus10005487 [exp] 377 / 3e-132 AT4G32830 545 / 0.0 ataurora1 (.1) Lus10006033 [exp] 338 / 1e-116 AT4G32830 488 / 2e-175 ataurora1 (.1) Lus10042229 [exp] 198 / 2e-60 AT5G58380 676 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Lus10028115 [exp] 197 / 6e-60 AT1G30270 793 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10042816 [exp] 197 / 9e-60 AT1G30270 794 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Lus10024448 [exp] 194 / 2e-58 AT5G25110 654 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10007448 [exp] 193 / 3e-58 AT5G25110 650 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Lus10036280 [exp] 189 / 5e-57 AT4G30960 662 / 0.0 SNF1-RELATED PROTEIN KINASE 3.14, CBL-INTERACTING PROTEIN KINASE 6, SOS3-interacting protein 3 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G080500 [exp] 477 / 2e-172 AT2G45490 470 / 2e-169 ataurora3 (.1) Potri.006G235000 [exp] 380 / 1e-133 AT4G32830 553 / 0.0 ataurora1 (.1) Potri.018G057700 [exp] 372 / 2e-130 AT4G32830 544 / 0.0 ataurora1 (.1) Potri.006G062800 [exp] 199 / 1e-60 AT1G30270 753 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.018G119200 [exp] 198 / 2e-60 AT1G30270 749 / 0.0 SNF1-RELATED PROTEIN KINASE 3.23, SOS2-like protein kinase 17, LOW-K+-SENSITIVE 1, CBL-interacting protein kinase 23 (.1) Potri.002G177900 [exp] 197 / 4e-60 AT1G01140 711 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.013G156000 [exp] 196 / 1e-59 AT5G58380 623 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1) Potri.006G263500 [exp] 196 / 1e-59 AT5G25110 568 / 0.0 SNF1-RELATED PROTEIN KINASE 3.25, CBL-interacting protein kinase 25 (.1) Potri.014G104200 [exp] 195 / 2e-59 AT1G01140 688 / 0.0 SNF1-RELATED PROTEIN KINASE 3.12, PROTEIN KINASE 6, CBL-interacting protein kinase 9 (.1.2.3) Potri.019G048800 [exp] 194 / 3e-59 AT5G58380 539 / 0.0 SNF1-RELATED PROTEIN KINASE 3.8, CBL-INTERACTING PROTEIN KINASE 10, SOS3-interacting protein 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0016 [flax] [poplar] PKinase PF00069 [flax] [poplar] Pkinase Protein kinase domain
Representative CDS sequence Show only first row Show all	>Lus10020580 pacid=23172288 polypeptide=Lus10020580 locus=Lus10020580.g ID=Lus10020580.BGIv1.0 annot-version=v1.0 ATGAAGGCCGAAAAAGCAGGAAGCAAGCGGCAGTGGTCGTTGGCGGACTTCGAGATCGGGAAGCCACTTGGGAAAGGGAAGTTCGGAAGAGTCTATCTAG CTCGGGAAGTCAAGAGCAAGTACATAGTGGCGCTGAAGGTGATATTCAAAGCACAGATCGAGAAGTACAAGATTCAGCATCAATTGATGAGAGAAATGGA GATCCAGACCACTCTCAAACACCCCAACGTGTTACGCCTCTACGGCTGGTTCGACGACGAGGAGAGGATCTTCCTCATTCTTGAGTACGCTCACGGCGGT GAGCTTTATGGATTTATGCAGAAACGAGGTCACTTGACTGAGAAGGAAGCTGCTACGTATATTGCGAGTCTTGCGTATGCATTAGCTTATTGCCATGGGA AGGACGTGATCCACAGAGACATTAAGCCGGAGAATCTGTTGCTGGATCATGAGGGCCGGTTAAAGATTGCAGATTTCGGGTGGTCTGTACAATCGAGAAG CAAGAGACACACCATGTGTGGAACATTGGATTACTTAGCACCAGAGCTTGTGGAGAACAAAGCTCATGACTACACAGTTGATAATTGGACATTAGGAGTG CTTTGTTACGAATTCCTCTATGGTAACCCTCCTTTCGAAGCAGAGGGGCAGCGCGATACTTTCAGAAGGATTATGAAGGTTGATCTTAACTTCCCTTCTC ACCCTCCAACCTCAGAGGAAGCAAAAGACATTATTAGCAAACTTCTGGTGAAGGACTCTTCTAAGCGTCTCTCTCTGCAAAAGATTATGGAACATCCCTG GATAACCAAGAATGCAGACCCCAAAGGTGCCTGCGTCGATTAG
AA sequence Show only first row Show all	>Lus10020580 pacid=23172288 polypeptide=Lus10020580 locus=Lus10020580.g ID=Lus10020580.BGIv1.0 annot-version=v1.0 MKAEKAGSKRQWSLADFEIGKPLGKGKFGRVYLAREVKSKYIVALKVIFKAQIEKYKIQHQLMREMEIQTTLKHPNVLRLYGWFDDEERIFLILEYAHGG ELYGFMQKRGHLTEKEAATYIASLAYALAYCHGKDVIHRDIKPENLLLDHEGRLKIADFGWSVQSRSKRHTMCGTLDYLAPELVENKAHDYTVDNWTLGV LCYEFLYGNPPFEAEGQRDTFRRIMKVDLNFPSHPPTSEEAKDIISKLLVKDSSKRLSLQKIMEHPWITKNADPKGACVD

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G45490		ATAUR3	ataurora3 (.1)		Lus10020580 [exp]	0	1
AT3G54560		HTA11	histone H2A 11 (.1)		Lus10003088 [exp]	1.4	0.8700
AT2G47640			Small nuclear ribonucleoprotei...		Lus10030367 [exp]	2.4	0.8716
AT5G58490			NAD(P)-binding Rossmann-fold s...		Lus10026385 [exp]	3.6	0.8315
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10041541 [exp]	3.9	0.8604
AT1G19690			NAD(P)-binding Rossmann-fold s...		Lus10024280 [exp]	4.2	0.8250
AT1G67230		CRWN1, LINC1	CROWDED NUCLEI 1, little nucle...		Lus10034076 [exp]	4.9	0.8532
AT5G41050			Pollen Ole e 1 allergen and ex...		Lus10012553 [exp]	5.0	0.8547
					Lus10034887 [exp]	5.7	0.8020
AT1G67590			Remorin family protein (.1.2)		Lus10036996 [exp]	6.3	0.8441
AT3G55000		TON1A	TONNEAU 1A, TONNEAU 1, tonneau...		Lus10001983 [exp]	6.7	0.8420

Compare expression of checked genes

Lus10020580 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.