Gene [FLAX] | FIBexDB

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Symbol

Arabidopsis homologues

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Locus ID	BLAST score/e-value	Alias	TAIR10 short description
AT5G03620	625 / 0		Subtilisin-like serine endopeptidase family protein (.1)
AT4G00230	575 / 0	XSP1	xylem serine peptidase 1 (.1)
AT5G59190	520 / 2e-175		subtilase family protein (.1)
AT5G59120	508 / 3e-170	ATSBT4.13	subtilase 4.13 (.1)
AT3G46850	508 / 3e-170		Subtilase family protein (.1)
AT5G59100	506 / 1e-169		Subtilisin-like serine endopeptidase family protein (.1)
AT5G59090	497 / 4e-166	ATSBT4.12	subtilase 4.12 (.1.2.3)
AT3G46840	493 / 2e-164		Subtilase family protein (.1)
AT5G58840	490 / 8e-164		Subtilase family protein (.1)
AT5G58830	486 / 3e-162		Subtilisin-like serine endopeptidase family protein (.1)

Paralogs

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Gene ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Lus10020581 [exp]	725 / 0	AT5G03620	653 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Lus10009313 [exp]	587 / 0	AT4G00230	924 / 0.0	xylem serine peptidase 1 (.1)
Lus10004685 [exp]	563 / 0	AT4G00230	647 / 0.0	xylem serine peptidase 1 (.1)
Lus10009868 [exp]	556 / 0	AT5G03620	605 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Lus10040253 [exp]	554 / 0	AT5G59090	640 / 0.0	subtilase 4.12 (.1.2.3)
Lus10003254 [exp]	545 / 0	AT5G03620	711 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Lus10009867 [exp]	548 / 1e-178	AT5G59190	629 / 0.0	subtilase family protein (.1)
Lus10004683 [exp]	525 / 2e-177	AT5G59190	600 / 0.0	subtilase family protein (.1)
Lus10016482 [exp]	513 / 3e-172	AT3G46850	709 / 0.0	Subtilase family protein (.1)

Poplar homologues

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Locus ID	BLAST score/e-value	At best hit	BLAST score/e-value	TAIR10 short description
Potri.009G145600 [exp]	701 / 0	AT5G03620	615 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Potri.006G114500 [exp]	666 / 0	AT5G03620	874 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Potri.002G151900 [exp]	606 / 0	AT4G00230	938 / 0.0	xylem serine peptidase 1 (.1)
Potri.012G133200 [exp]	560 / 0	AT5G59090	646 / 0.0	subtilase 4.12 (.1.2.3)
Potri.010G196900 [exp]	538 / 0	AT5G59100	657 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Potri.010G196800 [exp]	537 / 0	AT5G59100	599 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Potri.009G038001 [exp]	523 / 3e-176	AT3G46850	794 / 0.0	Subtilase family protein (.1)
Potri.010G196700 [exp]	508 / 1e-171	AT5G59100	579 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Potri.009G037900 [exp]	495 / 1e-165	AT5G59100	777 / 0.0	Subtilisin-like serine endopeptidase family protein (.1)
Potri.014G074500 [exp]	489 / 6e-165	AT4G00230	790 / 0.0	xylem serine peptidase 1 (.1)

PFAM info

Clan ID	Clan name	Pfam ID	Pfam name	Pfam description
CL0570 [flax] [poplar]	PPP-I	PF05922 [flax] [poplar]	Inhibitor_I9	Peptidase inhibitor I9
CL0570 [flax] [poplar]		PF00082 [flax] [poplar]	Peptidase_S8	Subtilase family

Representative CDS sequence

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>Lus10020582 pacid=23172344 polypeptide=Lus10020582 locus=Lus10020582.g ID=Lus10020582.BGIv1.0 annot-version=v1.0

ATGAGGAATTTGTTACCACTCGTATTTCTTGGTGTCCTGGTTGCTTCCGCATTCAGCCACGATGATCTTCACATGAAAGAACGAAAGGCTTATGTTGTGT

ACATGGGGAAGCCACGACATGGAGTTAGCCACATTGATGCCGCACAAAACCACCATGATATGCTTGCCTCTCTCCTCCATTCTGAGGAGCTAGCTAGAGA

AGTCAGATTTCGAAGCTACGGCAAGAGTTTTGATGGATTCGCCGCTCATTTACTGCCTCGCGAAGTAGAAAGACTCCGAGGGAATCCGAAGGTGGTTTCG

GTGTTCCCCGATAAGAAGCGTCCACTTGTAACAACGAGATCGTGGGATTATATCGGAGTGACCGAAACTATCAAGAGGAATATTCGAGTTGAAAGTGATC

TAATTGTTGCGGTACTTGATACTGGAATTTACATTGATGCCCCTGCATTCGATGACAAGGGATTTGGACCGCCGCCAAAGAAATGGAAAGGCATTTGCCA

AACAGGAGCCAATTTCACCGGTTGCAACAACAAGGTGATTGGTGCAAGAACCTACGACCGAAGCCATCCGCTGAGGGACCCACCTTCCCCGCTCGATACA

GCCGGACACGGGACCCACACAGCCTCCACCGTAGCGGGAATGCCGGTCCTCGATGCGAGCCTGTACGGGATCGGAAAGGGGACCGCCAGAGGAGGTGTTC

CCTCAGCCAGGCTGGCGATCTACAAAGTGTGTTCTTACGGGGAGGGCTGCGACGATTCCGACATGTTGGCCGGATTCGACGACGCCATCCACGACGGCGT

GGACGTCATCTCGATCTCGATCGGTGGGCCCATCGGGGAGTACTTCCAGGATTCGATTTCTATAGGCGCTTATCACGCGATGGAGCGTGGTATCTTGACT

AGCGCTGCAGCCGGCAACGATAGGGGCGTCGTGGGCTCCGTGACGAATGTAGCGCCGTGGATGCTGACCGTCGGCGCTACCGGTAGCGACCGGCAGTATA

AAACCACCATTGGACTTGGTAACGGGCGGAATTACTCTGGAGTTTCGATCAACACATTCAATCCGACAAAGAAAGTGTACCCATTAACTAGTGGGTTCAT

AGCACAAAATGCAAGTAGTGTGGATGCCCAATTAAGTCCAGGATATTGCTCTGAAGGTGCAATACTTCCAGAGAAGGTGAAGGGGAAAATCGTCGTATGC

AATGGCGACTCAAACGGCGCCACACTAATCGACGAACTGGGCGGAGTTGGGTTGGTTTCGTTGGACGAAGACGATTTAGGGCCGTGGACAGGGTTCGAGT

TTGTCATCCCAACTTCACTAGTCAACAATGTGACACTCTCCTCAATCCTAAACTACATCCATTCCACCAAGAACCCAGAGGCTGTTATTTACCAATCCGA

ACCGGTCATCGTTGAGGCTCCGTTCGTAGCTGGATTTTCGTCGGTCGGACCCAACATCCTCTCCCGGACTGTCCTCAAGCCGGACATTGGAGCTCCAGGG

GTGAACATTCTTGCATCCTACTCGAAAGTTCCGGCCCTCGTTGAGGATGCAATGGACAAAAGGCATCCAATGTACAACATCGTTAGTGGTACATCAATGG

CGACGCCTCATGCCTCGGCGGTCGCTATTTACATCAAGTCGTTCCATCCGAATTGGTCTCCGGCCGCCATCAAATCCGCCATCATGACCACCGCCTCGCG

GATTAAGGTGAAACACAAGATGGCGGAATACGCATACGGGTCGGGCCAGATCGACCCGGTCAAGGCGCTTGACCCTGGGTTGGTTTACGACATGTCGCCC

AAGGACTACATCCGTTTCCTATGCAAGGAAGGATACACGGGCTCGCGAATGAACATGGTTTCAGGGCACGATGCCACGTGCCCGCCAAACAGTGTACATG

TTGGCGGGCATGACGGAGTGAACTACCCCTCGATGAACGTGCAACTGGATCCCGAATCTACGAGAAACAAGTCATCCATGTTCGTGTTTCACCGCATCGT

GACAAACGTGGGACCCTTGGGGAATGCAACGTATACTGCACTGGTGTCTGTCCCAAAGGGTGTGAAGGTTATCGTTACGCCACGAACGTTGCGGTTCTCT

AGGGTTTACGAGAAGAGGTCGTTTCGGATGATCGTGACTGTGCCACCGGCTACGAGGATGGCTACACATGATGTGATTTCGGGTTCGTTGGAGTGGAGTG

ATGGGCTAGGGCATAATGTTAGAAGCCCTATTGTGGTTTCTCTAGCCATGGCGGCAGAGGGTGGTTTGTTTGGATGA

AA sequence

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>Lus10020582 pacid=23172344 polypeptide=Lus10020582 locus=Lus10020582.g ID=Lus10020582.BGIv1.0 annot-version=v1.0

MRNLLPLVFLGVLVASAFSHDDLHMKERKAYVVYMGKPRHGVSHIDAAQNHHDMLASLLHSEELAREVRFRSYGKSFDGFAAHLLPREVERLRGNPKVVS

VFPDKKRPLVTTRSWDYIGVTETIKRNIRVESDLIVAVLDTGIYIDAPAFDDKGFGPPPKKWKGICQTGANFTGCNNKVIGARTYDRSHPLRDPPSPLDT

AGHGTHTASTVAGMPVLDASLYGIGKGTARGGVPSARLAIYKVCSYGEGCDDSDMLAGFDDAIHDGVDVISISIGGPIGEYFQDSISIGAYHAMERGILT

SAAAGNDRGVVGSVTNVAPWMLTVGATGSDRQYKTTIGLGNGRNYSGVSINTFNPTKKVYPLTSGFIAQNASSVDAQLSPGYCSEGAILPEKVKGKIVVC

NGDSNGATLIDELGGVGLVSLDEDDLGPWTGFEFVIPTSLVNNVTLSSILNYIHSTKNPEAVIYQSEPVIVEAPFVAGFSSVGPNILSRTVLKPDIGAPG

VNILASYSKVPALVEDAMDKRHPMYNIVSGTSMATPHASAVAIYIKSFHPNWSPAAIKSAIMTTASRIKVKHKMAEYAYGSGQIDPVKALDPGLVYDMSP

KDYIRFLCKEGYTGSRMNMVSGHDATCPPNSVHVGGHDGVNYPSMNVQLDPESTRNKSSMFVFHRIVTNVGPLGNATYTALVSVPKGVKVIVTPRTLRFS

RVYEKRSFRMIVTVPPATRMATHDVISGSLEWSDGLGHNVRSPIVVSLAMAAEGGLFG

DESeq2's median of ratios [FLAX]

Coexpressed genes

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Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G03620			Subtilisin-like serine endopep...		Lus10020582 [exp]	0	1

Lus10020582 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.

Plant FIBer expression Database

Lus10020582 [FLAX]

DESeq2's median of ratios [FLAX]

Coexpressed genes

Lus10020582 coexpression network