Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G53940 70 / 1e-12 Mitochondrial substrate carrier family protein (.1) AT2G37890 67 / 8e-12 Mitochondrial substrate carrier family protein (.1) AT3G55640 62 / 2e-10 Mitochondrial substrate carrier family protein (.1) AT4G26180 59 / 2e-09 Mitochondrial substrate carrier family protein (.1) AT2G47490 56 / 4e-08 ATNDT1 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) AT1G25380 56 / 5e-08 ATNDT2 NAD+ transporter 2, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 2, NAD+ transporter 2 (.1) AT5G51050 56 / 6e-08 APC2 ATP/phosphate carrier 2, Mitochondrial substrate carrier family protein (.1) AT4G01100 55 / 9e-08 ADNT1 adenine nucleotide transporter 1 (.1.2) AT1G14560 52 / 4e-07 Mitochondrial substrate carrier family protein (.1) AT3G20240 51 / 1e-06 Mitochondrial substrate carrier family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006265 [exp] 336 / 3e-112 AT2G37890 115 / 3e-30 Mitochondrial substrate carrier family protein (.1) Lus10016523 [exp] 91 / 2e-19 AT2G37890 156 / 5e-44 Mitochondrial substrate carrier family protein (.1) Lus10016522 [exp] 91 / 5e-19 AT2G37890 155 / 6e-42 Mitochondrial substrate carrier family protein (.1) Lus10036193 [exp] 89 / 6e-19 AT2G37890 153 / 2e-43 Mitochondrial substrate carrier family protein (.1) Lus10040257 [exp] 72 / 2e-13 AT3G55640 358 / 2e-124 Mitochondrial substrate carrier family protein (.1) Lus10021497 [exp] 67 / 9e-12 AT3G53940 496 / 2e-177 Mitochondrial substrate carrier family protein (.1) Lus10024344 [exp] 65 / 4e-11 AT3G53940 417 / 4e-147 Mitochondrial substrate carrier family protein (.1) Lus10004689 [exp] 62 / 4e-10 AT3G55640 482 / 1e-172 Mitochondrial substrate carrier family protein (.1) Lus10022597 [exp] 62 / 5e-10 AT3G53940 486 / 3e-173 Mitochondrial substrate carrier family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.016G103300 [exp] 65 / 5e-11 AT3G53940 513 / 0.0 Mitochondrial substrate carrier family protein (.1) Potri.006G091900 [exp] 64 / 6e-11 AT3G53940 483 / 4e-172 Mitochondrial substrate carrier family protein (.1) Potri.008G060900 [exp] 61 / 9e-10 AT3G55640 489 / 2e-175 Mitochondrial substrate carrier family protein (.1) Potri.006G153600 [exp] 59 / 3e-09 AT4G26180 475 / 4e-170 Mitochondrial substrate carrier family protein (.1) Potri.010G197400 [exp] 57 / 2e-08 AT3G55640 488 / 1e-174 Mitochondrial substrate carrier family protein (.1) Potri.006G226300 [exp] 57 / 2e-08 AT1G14560 476 / 7e-170 Mitochondrial substrate carrier family protein (.1) Potri.002G200900 [exp] 56 / 2e-08 AT2G47490 471 / 1e-168 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1) Potri.014G095400 [exp] 56 / 3e-08 AT4G01100 599 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.002G168100 [exp] 55 / 1e-07 AT4G01100 565 / 0.0 adenine nucleotide transporter 1 (.1.2) Potri.014G125600 [exp] 54 / 1e-07 AT2G47490 448 / 1e-159 NAD+ transporter 1, ARABIDOPSIS THALIANA NAD+ TRANSPORTER 1, NAD+ transporter 1 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00153 [flax] [poplar] Mito_carr Mitochondrial carrier protein
Representative CDS sequence Show only first row Show all	>Lus10020583 pacid=23172295 polypeptide=Lus10020583 locus=Lus10020583.g ID=Lus10020583.BGIv1.0 annot-version=v1.0 ATGGAACAAAATATTGTCGACGCCTTGTTGGCCGGAATCGACTTCTTCGATCCTTCGATGGCGAAGTTCGTCATGTATCCGGTGGCCGGAGCGATTGTCG TGTCCCTCCGCGAGAGCTTGGCGGCTCCATTGACCCGCATTACTATTCTGTCGCAACTCGAAGGAAATCATAATCATAGGAAGGATGAGCTTGGAGGATT AGAAGAGATCGATCTTACTAGTAACAACTTTGGTTATCGTCTCTCGTATTTTGGTATCACCTCCTTACTCCATTCATGCTTCAAGCCTCTCTTTCCTGAA AGTATGCCTCCCGGTCAGGTGTTTTTGATGAGTGGGGCATTGTCTGCGCTGACTGCTTCTGTAATCATACTTCCCTTTAAGACAAGTACTAATTACAAGG AGTTTACCGCTACTTTCCGCGACATTCGATCGCTCTTTCTGAAAGCAAAACCGGGTGTTGTCTGGATGACACTAGGCATTCACCTATACGAATTGATGAT GATTTCCGATTTCGACACGGACCACGTGGTACATACGAGGCCTAGAGTGATGCTGGACCTTACTTGGGCTGTCATCGCCAGCGTCGCTCCTGAGATTTTG AAGTTCTTACAGCGTAAAAGGGAGCAAATTGGTCGAATAGTAGACGGATTTTTACGGAGCGAATTTGGTTATCGTCTAGCATATTGTGGTACCACCTCCT TGGCCAATTCGTGCTTCAAAATTCTATTCGATCTGGATAACATGTCTTCTTGTCCTCTGTTCTTTATAATCGGGGCCTTGTCTGCGTATACCACTTCTAT AATCTTATCTCCCTTCCGAGCAATTAAGACCAACAAGGGTTATGCTGCTACTTTCCGCGACATTTGGAGAGACGGTGGCCGTGATTTACCACCTACAACG TTCGACGATTTTCCCTGGATGACACTAGGCATTTCCCTATACGAAGGGTGTTTCCGATGGAGTCCCTGTTCCCGCCCCGGTCGAGTATATCAACTGTCTA GAGTGATGACGGACCTTAAATGGGCTGGCATAGCTACCCTTGTCAACACCATTCATCAAATTCTGACCGGGTTTGAACCCGGTCTGGAATTCGCCGAAGA GTGGTTCTCACTCAACTCTAAAGATATGTGGAGGGGGAACGTGGTCTCCATTCTTCACAGTCTAACGTATTGTGGAGTGAACTCCTTTGCTTATTTGAAT CTCAGGTCCTTTCTTACGGCTTTTGTATCGTCTTCTTGTCCGAAATTGGTAGCGTTTACGAGCGGAGCATTGGCCTCCCTTGCCGCGTCTTTGGTTTCAC ACCCTTTGGATACTTTGATAACTCACATTACATTTGAAGGGAAAGACATGCTACGTGGAAAACTACTCTCGACAACTTATGCACGAAAGATGGCGGCTTA CCGTCCCAGCTTTATGCCGGAATTTCGGCATCATTGTTGCCCACCTGTGAATGAATTACCGTCGGAATCTACGAGCTTCATGTTCGATCTTGCACGCACT AGCATCGCCACTCTTACTGCTTCCACTGTGGTGTATCCACTTGAAGTTGTACGACGAAAAATGCAGATGAAGAGGGCTACTGTGAATAATAACAGGAGTG TAAGTTTACTGAAAACTTTCAAAAGAGTGGTTCGAAAAGAAGGCGTGGAGGGATTATATCGCGGCGTCGAATCACATTTACTTAAAGTCGTCGCCGGTCA TGCATTTGCATTCACAGCGTTTGAGTTGCTCAAGCGATGA
AA sequence Show only first row Show all	>Lus10020583 pacid=23172295 polypeptide=Lus10020583 locus=Lus10020583.g ID=Lus10020583.BGIv1.0 annot-version=v1.0 MEQNIVDALLAGIDFFDPSMAKFVMYPVAGAIVVSLRESLAAPLTRITILSQLEGNHNHRKDELGGLEEIDLTSNNFGYRLSYFGITSLLHSCFKPLFPE SMPPGQVFLMSGALSALTASVIILPFKTSTNYKEFTATFRDIRSLFLKAKPGVVWMTLGIHLYELMMISDFDTDHVVHTRPRVMLDLTWAVIASVAPEIL KFLQRKREQIGRIVDGFLRSEFGYRLAYCGTTSLANSCFKILFDLDNMSSCPLFFIIGALSAYTTSIILSPFRAIKTNKGYAATFRDIWRDGGRDLPPTT FDDFPWMTLGISLYEGCFRWSPCSRPGRVYQLSRVMTDLKWAGIATLVNTIHQILTGFEPGLEFAEEWFSLNSKDMWRGNVVSILHSLTYCGVNSFAYLN LRSFLTAFVSSSCPKLVAFTSGALASLAASLVSHPLDTLITHITFEGKDMLRGKLLSTTYARKMAAYRPSFMPEFRHHCCPPVNELPSESTSFMFDLART SIATLTASTVVYPLEVVRRKMQMKRATVNNNRSVSLLKTFKRVVRKEGVEGLYRGVESHLLKVVAGHAFAFTAFELLKR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G37890			Mitochondrial substrate carrie...		Lus10020583 [exp]	0	1

Compare expression of checked genes

Lus10020583 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.