Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27610 73 / 2e-15 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G41080 59 / 2e-10 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G13600 57 / 8e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G02330 57 / 8e-10 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G30700 56 / 2e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G20230 55 / 3e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G06150 54 / 6e-09 bHLH bHLH089, EMB1444 EMBRYO DEFECTIVE 1444, basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.1), basic helix-loop-helix (bHLH) DNA-binding superfamily protein (.2) AT3G09040 54 / 8e-09 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G71460 53 / 1e-08 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT5G15340 53 / 1e-08 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004892 [exp] 310 / 2e-101 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016509 [exp] 60 / 5e-11 AT1G11290 361 / 1e-114 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10031994 [exp] 56 / 2e-09 AT3G02010 957 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10035164 [exp] 55 / 3e-09 AT3G02010 962 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10029884 [exp] 55 / 4e-09 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040776 [exp] 54 / 5e-09 AT1G11290 272 / 7e-82 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10014594 [exp] 54 / 7e-09 AT3G02330 901 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10011900 [exp] 54 / 9e-09 AT5G66520 281 / 4e-88 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10032091 [exp] 54 / 1e-08 AT3G02330 925 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184800 [exp] 121 / 2e-32 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G075300 [exp] 61 / 2e-11 AT3G26540 815 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.006G211400 [exp] 61 / 3e-11 AT3G11460 772 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G021700 [exp] 57 / 5e-10 AT3G47840 796 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G060600 [exp] 56 / 2e-09 AT3G24000 331 / 3e-106 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 54 / 7e-09 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G047600 [exp] 54 / 1e-08 AT1G18485 1077 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.004G059400 [exp] 53 / 1e-08 AT4G18750 1110 / 0.0 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.013G044700 [exp] 53 / 2e-08 AT3G22690 582 / 0.0 unknown protein Potri.009G035100 [exp] 52 / 4e-08 AT4G13650 397 / 8e-126 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020586 pacid=23172276 polypeptide=Lus10020586 locus=Lus10020586.g ID=Lus10020586.BGIv1.0 annot-version=v1.0 ATGAGAACTCAGACCCTTTCGAGAACAGTGAAAACCAACTTCATTGCTCGACGACATCAGGCCGGATTCGGATTCAGTGAATCGCATTTCCACTCAGTGG CTTTAGAGAAGGATGAACCTGACAATGCACACCACCTGTTCGAGAAAAGTCCTGACCAGGCAGGAAACTCGAATGATGCACACCAACTATTCTACGAAAG TCCTGACCGGGCAGGAAATTCGAACCGCTTGCTTTTCAAGCGGTCACGAAACAACAGACACTCTGACGTGGTGAATCTCTTTGTGGGCATTCATCGCCCC GGATTTCCTGTTGATGGATGCACAATTTCCTGTGTGTTCAAAGCCTGTGCATACTCGCTTGATCAAACACTTGGAGTCCAAATCCATGGCTACTCCACAA ACCATGGACTTTTGCAAGATGTCAGCGTTGGAACTTCAATGGGTGACATGTACTTCAAGAACGGCAGAGTCGTTGAAGGAAGGAGATTCTTAGATTAA
AA sequence Show only first row Show all	>Lus10020586 pacid=23172276 polypeptide=Lus10020586 locus=Lus10020586.g ID=Lus10020586.BGIv1.0 annot-version=v1.0 MRTQTLSRTVKTNFIARRHQAGFGFSESHFHSVALEKDEPDNAHHLFEKSPDQAGNSNDAHQLFYESPDRAGNSNRLLFKRSRNNRHSDVVNLFVGIHRP GFPVDGCTISCVFKACAYSLDQTLGVQIHGYSTNHGLLQDVSVGTSMGDMYFKNGRVVEGRRFLD

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020586 [exp]	0	1
AT5G46090			Protein of unknown function (D...		Lus10033645 [exp]	6.2	0.6516
					Lus10037868 [exp]	14.6	0.6307
AT5G59190			subtilase family protein (.1)		Lus10040747 [exp]	21.5	0.6293
					Lus10038051 [exp]	24.3	0.6228
AT5G01660			unknown protein		Lus10040599 [exp]	26.6	0.6228
AT3G12750		ZIP1	zinc transporter 1 precursor (...		Lus10014062 [exp]	28.7	0.6228
					Lus10029261 [exp]	30.7	0.6228
AT5G56990			unknown protein		Lus10029528 [exp]	32.6	0.6228
AT4G27420		ABCG9	ATP-binding cassette G9, ABC-2...		Lus10029635 [exp]	34.4	0.6228
					Lus10003825 [exp]	36.0	0.6228

Compare expression of checked genes

Lus10020586 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.