Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27610 296 / 8e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G33170 166 / 6e-45 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G39530 162 / 5e-44 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G19720 161 / 2e-43 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) AT2G03380 158 / 1e-42 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G33680 158 / 2e-42 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 155 / 2e-41 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G68930 153 / 1e-40 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G09040 152 / 2e-40 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G18750 150 / 1e-39 DOT4 DEFECTIVELY ORGANIZED TRIBUTARIES 4, Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004892 [exp] 560 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009269 [exp] 167 / 7e-46 AT2G13600 874 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10015898 [exp] 166 / 3e-45 AT2G13600 899 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10027389 [exp] 161 / 9e-45 AT5G66520 393 / 7e-131 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10027534 [exp] 162 / 1e-44 AT3G20730 474 / 2e-162 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10009913 [exp] 162 / 9e-44 AT3G09040 1114 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 162 / 1e-43 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 160 / 5e-43 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030908 [exp] 158 / 2e-42 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184800 [exp] 356 / 2e-115 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.007G104700 [exp] 168 / 3e-46 AT2G13600 834 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.005G187800 [exp] 167 / 1e-45 AT3G09040 1201 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.003G191000 [exp] 166 / 2e-45 AT1G11290 1178 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G136200 [exp] 162 / 6e-44 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G067500 [exp] 158 / 2e-42 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.010G161800 [exp] 157 / 3e-42 AT2G03380 786 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G244500 [exp] 155 / 9e-42 AT3G15130 891 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 154 / 4e-41 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.004G047800 [exp] 154 / 4e-41 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020587 pacid=23172322 polypeptide=Lus10020587 locus=Lus10020587.g ID=Lus10020587.BGIv1.0 annot-version=v1.0 ATGCAGTTTCGAAATGTGGTTTCCTGGACTTCGTTGCTCACCGGATATGCACAGAACGGATTGAAAACCGAGGTAGAGGAAATGTTCGTCGAAATGCTGA GAGATGGCGTTCAACCGGGGCAGTACACATTCGCCACGGTGATTGGAAGCTTGGGAAGAATGATTGAAAAAGGAATTCAAGTTCAAGCTGCAGCGATAAA GAACGGATTCCAGACAGCTGCACCGGTCTCGAATTCGTTAGTGAGCCTTTACTCGAAATCCGGGATGATTAAGGACGCGAGAGCTGTATTCGATCGAATT TTCAATAGGACTGCCGTTAGCTGGAACAGTATGGTGGCTGGTTATGTAACCAACGGGTTCGAATTCCAATCTGTCGAGATTTTCCAGCAAATGAGGCTTG CTGGTAACGGTAAGTGTAACGCGATGAACGATGCTTTCGAGATATTTTCTAGTACGAATGAAGAAACTCATGATGTTGTATTATGGACTGCTATGATCAG TGGCTATTTACAGAATGGAAATGCAGAGAAAGCTGTGGATTTGTTTCGTCGTATGAACAAAAAGGGAAGCATTCGACCAAAAGAGTTTACTTATTCGACA ATTCTAACCGCTCAACCTATCATTTCTCCGTTTCAAGTACATGCACAAGCAATCAAAGGCAATGTGGAGAAATCTCCTACGGTAGGGACTGCATTGCTGG ATGCCTATGTCGGAATAAAAGAAGTCGAAGAAGCTTCGAAGGTTTTCGACAGAATCGGTACGAAGGATATCGTGGCATGGTCAGCTATGGTAGCTGGATA TGCTCAAGCAGGAACAGAGAAAGCCGTCAAGACATTCGTCGAGATGGCGAGGAACGGAGTCAAGCCTAACGAGTATACGTTCTCACGTCGTGAATTCCTG TGCTACTGCAATCGCGCCGGTAAAGCAAGGGAAGCAGATCCATGCCTGGTCGATAAAATCGAGAAAGAACGATGCTTTATGCGCGTGCAGCGCTCTTGTT ACGATGTATGCCAAAACCGGAGATATCGAGAGTGCAAATTTAGTGTTCGCGAGGCAAAAGGAACGGGATTTGGTTTCGTGGAATTCGATGATTTCGGGGT ATGCACAGCACGGGAATGCGAAAAGGGCTCTCGAGGTTTTTGA
AA sequence Show only first row Show all	>Lus10020587 pacid=23172322 polypeptide=Lus10020587 locus=Lus10020587.g ID=Lus10020587.BGIv1.0 annot-version=v1.0 MQFRNVVSWTSLLTGYAQNGLKTEVEEMFVEMLRDGVQPGQYTFATVIGSLGRMIEKGIQVQAAAIKNGFQTAAPVSNSLVSLYSKSGMIKDARAVFDRI FNRTAVSWNSMVAGYVTNGFEFQSVEIFQQMRLAGNGKCNAMNDAFEIFSSTNEETHDVVLWTAMISGYLQNGNAEKAVDLFRRMNKKGSIRPKEFTYST ILTAQPIISPFQVHAQAIKGNVEKSPTVGTALLDAYVGIKEVEEASKVFDRIGTKDIVAWSAMVAGYAQAGTEKAVKTFVEMARNGVKPNEYTFSRREFL CYCNRAGKAREADPCLVDKIEKERCFMRVQRSCYDVCQNRRYRECKFSVREAKGTGFGFVEFDDFGVCTARECEKGSRGF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020587 [exp]	0	1

Compare expression of checked genes

Lus10020587 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.