Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27610 422 / 1e-142 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT2G22070 325 / 3e-106 pentatricopeptide (PPR) repeat-containing protein (.1) AT1G20230 311 / 4e-101 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G09950 315 / 2e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 301 / 2e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT4G02750 309 / 7e-100 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G16835 303 / 4e-99 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 305 / 1e-98 pentatricopeptide (PPR) repeat-containing protein (.1) AT4G33990 306 / 3e-98 EMB2758 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G49170 302 / 1e-96 EMB2261 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004892 [exp] 558 / 0 AT2G27610 998 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010998 [exp] 325 / 1e-106 AT4G16835 778 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016387 [exp] 309 / 3e-103 AT4G33990 717 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10040577 [exp] 302 / 1e-101 AT1G25360 577 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10016425 [exp] 308 / 3e-99 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10029436 [exp] 304 / 6e-99 AT3G08820 828 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10000117 [exp] 295 / 6e-99 AT4G21065 404 / 5e-139 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10014956 [exp] 293 / 3e-98 AT5G13230 484 / 1e-165 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10019735 [exp] 305 / 4e-98 AT4G33990 1015 / 0.0 embryo defective 2758, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184800 [exp] 432 / 1e-146 AT2G27610 1061 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.015G018700 [exp] 320 / 3e-103 AT3G49170 1040 / 0.0 embryo defective 2261, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G075000 [exp] 313 / 2e-102 AT2G41080 755 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.016G077700 [exp] 310 / 5e-102 AT4G30700 489 / 1e-164 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 314 / 8e-102 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.004G047800 [exp] 317 / 2e-101 AT4G13650 654 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.002G027800 [exp] 313 / 2e-101 AT1G25360 1047 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G105700 [exp] 307 / 3e-100 AT3G08820 810 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.018G040100 [exp] 308 / 6e-100 AT1G08070 974 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 309 / 9e-100 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020588 pacid=23172270 polypeptide=Lus10020588 locus=Lus10020588.g ID=Lus10020588.BGIv1.0 annot-version=v1.0 ATGCGGGCTCGGAACGTGGAAATGGATGGTGTGACGTTCATTAGTGTGATATCGGCGTGCACGCACGCTGGATTGATTGAGGAAGGTCGAAAGTATTTCG ACTTGATGGGGAAGGATTATCGAATCGAGCCGACAATGGAGCATTATTCCTGTTTGGTGGATCTTTATGGTCGAGCTGGGAGGCTCGAAAAGGCAATGGA TGTCATAAAGATGATGCCTTTTCCACCAGGTGCGACGTTGTGGAGGACGGTTCTCGGTGCAGCCCGTGTGCACCGGAATCTCGAGATAGGCGAGCTCGCT GCAGAGAATCTTATATCGATCCAGCCAGAGGATTCGGCAGCCTATGTGCTTTTGTCTAATATGCACGCGGTGGCCGGGAACTGGAAGGAGAGAACTAAAG TAAGGAAGTTGATGGATGTTAGGAATGTGAAGAAGGAAGCCGGGTACAGCTGGATCGAGGTGAAGAACACGACCCACTCATTTTTAGCGGCCGATGTTTC GCACCCCATGTCGAATTCGATATATGCAAAGCTTAAGGAGCTCGGTTCGAAGTTAAGAGATGTTGGGTATAGACCGGATACTGAAAATGTGCTCCTTGAT GTGGATGATGAACATATGGAATCGGTTCTTTCGCAGCATAGCGAGAGGCTGGCAATTGCGTTCGGGTTAATTTCGACGCCTCGTTGGACTCCGCTGCGGA TTATGAAGAATTTGAGGGTTTGTGGGGACTGCCATGCTGTGATTAAGTTGATCTCGGAAATAGAAGGGAGGTACATTGTTGTTAGGGATACTAATCGGTT CCATCACTTCAAGGAGGGTTCTTGCTCTTGTGGAGATTATTGGTGA
AA sequence Show only first row Show all	>Lus10020588 pacid=23172270 polypeptide=Lus10020588 locus=Lus10020588.g ID=Lus10020588.BGIv1.0 annot-version=v1.0 MRARNVEMDGVTFISVISACTHAGLIEEGRKYFDLMGKDYRIEPTMEHYSCLVDLYGRAGRLEKAMDVIKMMPFPPGATLWRTVLGAARVHRNLEIGELA AENLISIQPEDSAAYVLLSNMHAVAGNWKERTKVRKLMDVRNVKKEAGYSWIEVKNTTHSFLAADVSHPMSNSIYAKLKELGSKLRDVGYRPDTENVLLD VDDEHMESVLSQHSERLAIAFGLISTPRWTPLRIMKNLRVCGDCHAVIKLISEIEGRYIVVRDTNRFHHFKEGSCSCGDYW

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27610			Tetratricopeptide repeat (TPR)...		Lus10020588 [exp]	0	1
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023037 [exp]	6.9	0.6713
AT3G57500			unknown protein		Lus10012197 [exp]	10.0	0.6245
AT5G28237			Pyridoxal-5'-phosphate-depende...		Lus10008278 [exp]	16.4	0.6361
AT5G51330		DYAD, SWI1	SWITCH1 (.1)		Lus10009659 [exp]	17.5	0.5491
AT4G10750			Phosphoenolpyruvate carboxylas...		Lus10000223 [exp]	18.0	0.6358
					Lus10036058 [exp]	34.1	0.6126
AT5G11630			unknown protein		Lus10002035 [exp]	36.4	0.6115
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10002511 [exp]	37.2	0.6160
AT4G33070			Thiamine pyrophosphate depende...		Lus10018181 [exp]	38.8	0.5969
AT2G26975			Ctr copper transporter family ...		Lus10023045 [exp]	47.0	0.5416

Compare expression of checked genes

Lus10020588 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.