Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G14770 103 / 1e-25 CPP ATTCX2 TESMIN/TSO1-like CXC 2 (.1) AT3G22780 97 / 3e-23 CPP ATTSO1, TSO1 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G22760 84 / 1e-18 CPP SOL1 Tesmin/TSO1-like CXC domain-containing protein (.1) AT3G04850 59 / 3e-10 CPP Tesmin/TSO1-like CXC domain-containing protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10006604 [exp] 288 / 1e-93 AT4G14770 446 / 1e-147 TESMIN/TSO1-like CXC 2 (.1) Lus10039358 [exp] 289 / 3e-91 AT3G22760 367 / 9e-113 Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002895 [exp] 72 / 2e-14 AT3G22780 236 / 7e-68 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Lus10002033 [exp] 70 / 5e-14 AT3G22780 248 / 4e-71 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G156100 [exp] 164 / 4e-47 AT4G14770 522 / 1e-176 TESMIN/TSO1-like CXC 2 (.1) Potri.010G083400 [exp] 145 / 2e-40 AT4G14770 504 / 6e-170 TESMIN/TSO1-like CXC 2 (.1) Potri.013G038301 [exp] 101 / 5e-25 AT3G22780 196 / 1e-55 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.005G051100 [exp] 90 / 5e-21 AT4G14770 300 / 1e-90 TESMIN/TSO1-like CXC 2 (.1) Potri.018G030000 [exp] 75 / 9e-16 AT4G14770 207 / 1e-56 TESMIN/TSO1-like CXC 2 (.1) Potri.006G251200 [exp] 60 / 1e-10 AT3G22780 188 / 6e-50 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1) Potri.001G173600 [exp] 58 / 7e-10 AT3G22780 160 / 5e-41 CHINESE FOR 'UGLY', Tesmin/TSO1-like CXC domain-containing protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020590 pacid=23172312 polypeptide=Lus10020590 locus=Lus10020590.g ID=Lus10020590.BGIv1.0 annot-version=v1.0 ATGCAAGCCGAAAAGAACAATGCTTATGAAGATAAGCAACTGGTTCCTTTCAATTCTAGCAGTGATTCCTCAAGGTGCACTGTACCTGGAATGGGGTTGC ACTTAAACTCTCTCGCAAGAAGTTTGAATACCAGAGGCAGTACCAATGAGACTTTGTCTTCTGTAATAAGTCTTGACCCTTTCAACTCTCCAATAATAGG ACAAGAACTCCTTGAATCATTGAATATAGGCACCTCTGACGGGAATTTGGATCCCCCCGAAAACAATGTCAAACTTGCAGAGGATATCTCACCAGCATCT GCTTATTTGGTTAACGAAGAGTTTGGCTTGGGTAGCCCCAGAAAGAAAAGGCTGAAGTTGGAAGGAGAAGCCGAGTCCTGCAAGCGTTCTACTGTGAATG TTTTGCTGCTGGGGTATACTGCATCGAACCATGTTCCTGTGAAGATTTGCTTCAATAAGCCCATTCACGAGGATACAGTGCTATCAACTCGTAAGCATAT TGAGTCTCGCAATCCACTTGCATTTGCTCCCAGAGTGATTAGGACATCTGAGCCTGGAGCAGCTGAGATAATTAGTTTAGAGCTTGTAAATTTATGGATG TAA
AA sequence Show only first row Show all	>Lus10020590 pacid=23172312 polypeptide=Lus10020590 locus=Lus10020590.g ID=Lus10020590.BGIv1.0 annot-version=v1.0 MQAEKNNAYEDKQLVPFNSSSDSSRCTVPGMGLHLNSLARSLNTRGSTNETLSSVISLDPFNSPIIGQELLESLNIGTSDGNLDPPENNVKLAEDISPAS AYLVNEEFGLGSPRKKRLKLEGEAESCKRSTVNVLLLGYTASNHVPVKICFNKPIHEDTVLSTRKHIESRNPLAFAPRVIRTSEPGAAEIISLELVNLWM

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G14770	CPP	ATTCX2	TESMIN/TSO1-like CXC 2 (.1)		Lus10020590 [exp]	0	1
AT3G16840			P-loop containing nucleoside t...		Lus10023706 [exp]	6.3	0.8624
AT1G20960		EMB1507	embryo defective 1507, U5 smal...		Lus10042628 [exp]	12.1	0.8927
AT1G13630			Tetratricopeptide repeat (TPR)...		Lus10036839 [exp]	14.1	0.8660
AT2G34357			ARM repeat superfamily protein...		Lus10041232 [exp]	15.0	0.8903
AT4G04885		PCFS4	PCF11P-similar protein 4 (.1)		Lus10007652 [exp]	18.6	0.8682
AT5G58450			Tetratricopeptide repeat (TPR)...		Lus10026402 [exp]	20.3	0.8771
					Lus10019215 [exp]	23.7	0.8282
AT4G30700			Pentatricopeptide repeat (PPR)...		Lus10035815 [exp]	24.4	0.8419
AT5G11030		ALF4	aberrant lateral root formatio...		Lus10006197 [exp]	26.2	0.8291
AT3G20050		ATTCP-1	T-complex protein 1 alpha subu...		Lus10036713 [exp]	26.2	0.7840

Compare expression of checked genes

Lus10020590 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.