Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G32645 50 / 1e-07 Domain of unknown function (DUF313) (.1) AT2G27410 45 / 9e-06 B3 Domain of unknown function (DUF313) (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10027284 [exp] 51 / 2e-07 AT2G27410 67 / 2e-12 Domain of unknown function (DUF313) (.1) Lus10038980 [exp] 51 / 2e-07 AT2G27410 69 / 3e-13 Domain of unknown function (DUF313) (.1) Lus10027272 [exp] 50 / 3e-07 AT2G27410 66 / 9e-13 Domain of unknown function (DUF313) (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G031600 [exp] 45 / 2e-05 AT2G27410 59 / 2e-09 Domain of unknown function (DUF313) (.1) Potri.013G065401 [exp] 41 / 0.0001 AT2G24670 51 / 5e-08 Domain of unknown function (DUF313) (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0405 [flax] [poplar] DNA_b-psBarrel PF03754 [flax] [poplar] DUF313 Domain of unknown function (DUF313)
Representative CDS sequence Show only first row Show all	>Lus10020591 pacid=23172333 polypeptide=Lus10020591 locus=Lus10020591.g ID=Lus10020591.BGIv1.0 annot-version=v1.0 ATGCCGGCCATCCCATGTTCTGCCGCAATCCCTGAACCCCTGAAGTCCAAAATCGACTCAATCTGCATCCACCACAGCCAACCCCAACTCATCATCGAAA AAAGACTCACAGCCTCCGACATCCACAAGGAAAAGCTCCTAATCCCATCTTCCCAACCCTCCACCCCGAACTTCCTTACCGCCGCAGAAAATAGACAGCT AACCGCCGCCGCCACCGACAACATCATCAAATTCAACGACAGAACAGTCGTGGCGATGCTGGTGGACCCGGCGATGCTGGCGGACCCGTCGCTGAAGACC TGCACCGTCGCCATGAAGCTGGTCAACGGCGGTCGCGATTACCTGATCAGCGGCAACTGGAGCCTGGTGCTCAAGAGGAACAGGGGAGTTCTGTTCGAAG ACGCTCTGGTTCGGCTCTGGTGCTTCCGCCACAGCGAGGAGCTCTGGCTCGCCGTCGAAGCTATGCCGGCGGAGGAGAAGGTGGAGGAGACAGTGGAGGT GAAAGAAGATATTTTTATGAAAGCTGGGAGAATGGCTTATGAGTATTTGGAAAGGAGAAAGGAGATGGAGGAGAGGTATCAGTGGACGTTGGAGGTTTTG AAGAGGCATGATGATCTTAGTGGTTGA
AA sequence Show only first row Show all	>Lus10020591 pacid=23172333 polypeptide=Lus10020591 locus=Lus10020591.g ID=Lus10020591.BGIv1.0 annot-version=v1.0 MPAIPCSAAIPEPLKSKIDSICIHHSQPQLIIEKRLTASDIHKEKLLIPSSQPSTPNFLTAAENRQLTAAATDNIIKFNDRTVVAMLVDPAMLADPSLKT CTVAMKLVNGGRDYLISGNWSLVLKRNRGVLFEDALVRLWCFRHSEELWLAVEAMPAEEKVEETVEVKEDIFMKAGRMAYEYLERRKEMEERYQWTLEVL KRHDDLSG

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G32645			Domain of unknown function (DU...		Lus10020591 [exp]	0	1
					Lus10011438 [exp]	3.2	0.7683
AT1G16930			F-box/RNI-like/FBD-like domain...		Lus10023036 [exp]	5.8	0.7272
AT1G06340			Plant Tudor-like protein (.1)		Lus10039027 [exp]	7.1	0.7272
AT3G60680			Plant protein of unknown funct...		Lus10034935 [exp]	7.5	0.7024
AT5G36220		CYP91A1, CYP81D...	CYTOCHROME P450 91A1, cytochro...		Lus10018718 [exp]	8.2	0.7272
AT2G15220			Plant basic secretory protein ...		Lus10026585 [exp]	8.4	0.6311
AT2G44220			Protein of Unknown Function (D...		Lus10006862 [exp]	9.2	0.7272
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10026169 [exp]	10.1	0.7272
AT4G26466		LRE	lorelei (.1)		Lus10011066 [exp]	12.0	0.6557
AT5G25940			early nodulin-related (.1)		Lus10043290 [exp]	13.3	0.6241

Compare expression of checked genes

Lus10020591 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.