Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27590 364 / 3e-126 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004890 [exp] 496 / 7e-178 AT2G27590 492 / 4e-175 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G184400 [exp] 410 / 1e-143 AT2G27590 490 / 5e-174 S-adenosyl-L-methionine-dependent methyltransferases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020593 pacid=23172326 polypeptide=Lus10020593 locus=Lus10020593.g ID=Lus10020593.BGIv1.0 annot-version=v1.0 ATGTTGTTACTAGGGATGCAGCCTGACAGAGTTTGCACCTTTTACAGTACTGAATGGCTAAGGGGGGGGGACTCGAGAAGGACTGCTGTAGGAGTGGATT TCGACCTTGAAGCACTCAACTGGTGCATGGATAACAACCTGAACAAATTCGGGTCAGATGGATATTCCAGAATATCCTTGTTCCACGGGAATGTCTTGCA GCCTCTCGAGGCGAAACTGTTGAGGACCCGCGAATCTGAAGAGCTGATTCGTAGCATTAAGCTGGAAGAAGAAGAAGAAGAAGAAGATGAAGAAGAGAGT ATACAGAATCCAGATTTAGACTCGCCGATTTCTCCCGGTGACAAGTACCTGAAGAGAAACTGTCTGCTACCGGCGAGAGACATCGTGTGTGCTTTTAACT TCAGCTGCTGTTGTCTCCACAAACGGGCAGAAGTCGTGCTGTATTTCAAGAACGTTCTCGACTGCTTGTCGACGAAAGGCGGGATCTTCGCGATGGATCT GTATGGAGGTACTTCGAGCGAGCAGAAGCTAAGGCTTCAGAGACGGTTTCTGAATTTTACGTACATGTGGGAGCAAGACGAATTTGACATAGTCGGTCGT AAAACGAGAATCAGCCTCCATTTCCATCTGCACAAGCAGCAGAGGAAGATCCGGCATGCATTTTCGTACATCTGGAGACTATGGTCATTGCCAGAAATGA AAGACTGCTTAGAGGAGGCAGGGTTCCAGTCCGTCCATTTCTGGCTTCGCAAGATGCCGGATGTCGAGGAAAGCAGGAGCAGTGAAGGGTTTGGTGCTGG ACGAGATATAAAGTACGAGGAGGTCAAGAAGTTCGAGCAAGAGGATTCCTGGAATGCTTATATTGTCGCTGTCGCAAACTCGAGCTAA
AA sequence Show only first row Show all	>Lus10020593 pacid=23172326 polypeptide=Lus10020593 locus=Lus10020593.g ID=Lus10020593.BGIv1.0 annot-version=v1.0 MLLLGMQPDRVCTFYSTEWLRGGDSRRTAVGVDFDLEALNWCMDNNLNKFGSDGYSRISLFHGNVLQPLEAKLLRTRESEELIRSIKLEEEEEEEDEEES IQNPDLDSPISPGDKYLKRNCLLPARDIVCAFNFSCCCLHKRAEVVLYFKNVLDCLSTKGGIFAMDLYGGTSSEQKLRLQRRFLNFTYMWEQDEFDIVGR KTRISLHFHLHKQQRKIRHAFSYIWRLWSLPEMKDCLEEAGFQSVHFWLRKMPDVEESRSSEGFGAGRDIKYEEVKKFEQEDSWNAYIVAVANSS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27590			S-adenosyl-L-methionine-depend...		Lus10020593 [exp]	0	1
AT1G01320			Tetratricopeptide repeat (TPR)...		Lus10020453 [exp]	3.9	0.7728
AT4G35130			Tetratricopeptide repeat (TPR)...		Lus10003233 [exp]	4.0	0.8138
AT1G78840			F-box/RNI-like/FBD-like domain...		Lus10008295 [exp]	5.2	0.7798
AT3G01360			Family of unknown function (DU...		Lus10013105 [exp]	11.9	0.7251
AT5G24650			Mitochondrial import inner mem...		Lus10032959 [exp]	15.4	0.7674
AT1G64790		ILA	ILITYHIA (.1.2)		Lus10003747 [exp]	15.6	0.7756
AT1G66520		PDE194	pigment defective 194, formylt...		Lus10000450 [exp]	18.8	0.7830
AT1G79120			Ubiquitin carboxyl-terminal hy...		Lus10032172 [exp]	27.7	0.7627
AT2G36840		ACR10	ACT domain repeats 10, ACT-lik...		Lus10028812 [exp]	29.5	0.7604
AT2G18260		ATSYP112, SYP11...	syntaxin of plants 112 (.1)		Lus10026005 [exp]	33.9	0.7296

Compare expression of checked genes

Lus10020593 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.