Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G36320 136 / 3e-41 A20/AN1-like zinc finger family protein (.1) AT2G27580 130 / 4e-39 A20/AN1-like zinc finger family protein (.1.2) AT4G12040 109 / 2e-30 AtSAP7 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) AT3G52800 104 / 1e-28 A20/AN1-like zinc finger family protein (.1) AT4G22820 103 / 3e-28 A20/AN1-like zinc finger family protein (.1.2) AT1G51200 101 / 1e-27 A20/AN1-like zinc finger family protein (.1.2.3.4) AT3G12630 88 / 2e-22 SAP5 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) AT1G12440 84 / 7e-21 A20/AN1-like zinc finger family protein (.1.2) AT4G14225 76 / 4e-18 A20/AN1-like zinc finger family protein (.1) AT4G25380 73 / 6e-17 AtSAP10, SAP10 Arabidopsis thaliana stress-associated protein 10, stress-associated protein 10 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10003246 [exp] 128 / 4e-38 AT2G36320 201 / 3e-67 A20/AN1-like zinc finger family protein (.1) Lus10031833 [exp] 110 / 5e-31 AT1G51200 186 / 5e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10006671 [exp] 107 / 1e-29 AT1G12440 204 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10031262 [exp] 106 / 2e-29 AT1G51200 187 / 2e-61 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10004889 [exp] 105 / 2e-29 AT1G51200 85 / 6e-22 A20/AN1-like zinc finger family protein (.1.2.3.4) Lus10007015 [exp] 105 / 7e-29 AT1G12440 207 / 3e-69 A20/AN1-like zinc finger family protein (.1.2) Lus10028903 [exp] 104 / 2e-28 AT1G12440 205 / 3e-68 A20/AN1-like zinc finger family protein (.1.2) Lus10035603 [exp] 97 / 5e-26 AT2G36320 152 / 3e-48 A20/AN1-like zinc finger family protein (.1) Lus10037702 [exp] 93 / 6e-24 AT3G12630 176 / 1e-56 stress associated protein 5, A20/AN1-like zinc finger family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G144100 [exp] 140 / 9e-43 AT2G27580 166 / 5e-53 A20/AN1-like zinc finger family protein (.1.2) Potri.004G184300 [exp] 139 / 2e-42 AT2G27580 156 / 4e-49 A20/AN1-like zinc finger family protein (.1.2) Potri.006G056500 [exp] 113 / 3e-32 AT1G51200 167 / 2e-53 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.003G205500 [exp] 113 / 4e-32 AT1G51200 202 / 4e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G018600 [exp] 111 / 2e-31 AT1G51200 203 / 2e-67 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.016G051700 [exp] 108 / 2e-30 AT1G51200 164 / 3e-52 A20/AN1-like zinc finger family protein (.1.2.3.4) Potri.001G115000 [exp] 108 / 3e-30 AT4G12040 169 / 4e-54 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.007G078500 [exp] 102 / 8e-28 AT4G12040 120 / 6e-35 stress-associated protein 7, A20/AN1-like zinc finger family protein (.1.2) Potri.001G269400 [exp] 100 / 1e-26 AT3G12630 160 / 2e-50 stress associated protein 5, A20/AN1-like zinc finger family protein (.1) Potri.003G117100 [exp] 97 / 1e-25 AT1G12440 170 / 2e-54 A20/AN1-like zinc finger family protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01754 [flax] [poplar] zf-A20 A20-like zinc finger PF01428 [flax] [poplar] zf-AN1 AN1-like Zinc finger
Representative CDS sequence Show only first row Show all	>Lus10020594 pacid=23172311 polypeptide=Lus10020594 locus=Lus10020594.g ID=Lus10020594.BGIv1.0 annot-version=v1.0 ATGCCAGCGGAAAAGCAAAGATGCCAGCAGCCTCAGAGGCTATGCGCTAACAACTGCGGGTTCTTCGGCAGTCCAACGACGCAGGATTTCTGCTCCAAGT GCTACCGAGATCTGCAGCTCAAGGAGCAAGGCAAGTTCGCGTTGAATCAGCCCTTGCCCATCTCTTCATCTTCCTCCTCCGCCGTGTCCTCGTCGTCGTC AGTCCCTTCTCCGGCGGTGGATGTCGGGAAGAAGGCGCCGGCGATGGAGGTGGTGGTTGCGGCGGCGGTGGTTGCGGTGGCGGCTCCGGAGGTTGATATG GAGAAGAAGGATGTGTCGGTGGGGACGCAGCCCAATAGGTGCACCCAGTGCAAGCGGCGCGTGGGGCTGACGGGTTTCAAGTGCAAGTGCGGGATGGTTT TCTGCGGCGGCCCCCGGTATCCGGAGCTGCACGGATGCAGCTTCGATTTCAAGACGTTGGGGAAGGAACAGATCGCCAAGGAAAATCCGATCGTCAAGGG GAAAAAGCTACGAAAGATCTGA
AA sequence Show only first row Show all	>Lus10020594 pacid=23172311 polypeptide=Lus10020594 locus=Lus10020594.g ID=Lus10020594.BGIv1.0 annot-version=v1.0 MPAEKQRCQQPQRLCANNCGFFGSPTTQDFCSKCYRDLQLKEQGKFALNQPLPISSSSSSAVSSSSSVPSPAVDVGKKAPAMEVVVAAAVVAVAAPEVDM EKKDVSVGTQPNRCTQCKRRVGLTGFKCKCGMVFCGGPRYPELHGCSFDFKTLGKEQIAKENPIVKGKKLRKI

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G36320			A20/AN1-like zinc finger famil...		Lus10020594 [exp]	0	1
AT3G62260			Protein phosphatase 2C family ...		Lus10009993 [exp]	1.7	0.8482
AT1G51200			A20/AN1-like zinc finger famil...		Lus10004889 [exp]	2.6	0.8831
AT5G42050			DCD (Development and Cell Deat...		Lus10023059 [exp]	4.2	0.8686
AT1G13360			unknown protein		Lus10034310 [exp]	7.2	0.8366
AT3G01400			ARM repeat superfamily protein...		Lus10018685 [exp]	7.9	0.8238
AT1G17730		CHMP1B, VPS46.1	CHARGED MULTIVESICULAR BODY PR...		Lus10006868 [exp]	9.5	0.8181
AT2G38360		PRA1.B4	prenylated RAB acceptor 1.B4 (...		Lus10012224 [exp]	9.7	0.8312
AT2G45760		BAL, BAP2	BON ASSOCIATION PROTEIN 1-LIKE...		Lus10036571 [exp]	11.0	0.8180
AT2G39050		ArathEULS3	Euonymus lectin S3, hydroxypro...		Lus10006551 [exp]	11.2	0.8274
AT4G30440		GAE1	UDP-D-glucuronate 4-epimerase ...		Lus10019967 [exp]	12.4	0.8087

Compare expression of checked genes

Lus10020594 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.