Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08290 323 / 4e-109 C2H2ZnF WIP3 WIP domain protein 3 (.1) AT1G51220 293 / 5e-97 C2H2ZnF AtWIP5, WIP5 WIP domain protein 5 (.1) AT3G57670 291 / 7e-96 C2H2ZnF WIP2, NTT WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) AT3G20880 289 / 1e-94 C2H2ZnF WIP4 WIP domain protein 4 (.1) AT1G13290 280 / 1e-92 C2H2ZnF WIP6, DOT5 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) AT1G34790 271 / 4e-89 C2H2ZnF WIP1, TT1 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) AT1G34370 111 / 2e-27 C2H2ZnF STOP1 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3) AT5G22890 97 / 3e-22 C2H2ZnF C2H2 and C2HC zinc fingers superfamily protein (.1) AT5G03150 89 / 5e-19 C2H2ZnF JKD JACKDAW, C2H2-like zinc finger protein (.1) AT5G66730 87 / 2e-18 C2H2ZnF IDD1, ENY INDETERMINATE DOMAIN 1, ENHYDROUS, C2H2-like zinc finger protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004887 [exp] 622 / 0 AT1G08290 357 / 9e-123 WIP domain protein 3 (.1) Lus10031271 [exp] 305 / 4e-101 AT3G57670 379 / 6e-131 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10031838 [exp] 302 / 4e-100 AT3G57670 386 / 4e-133 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10035044 [exp] 285 / 3e-94 AT1G13290 338 / 1e-116 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10021700 [exp] 285 / 4e-94 AT1G13290 333 / 2e-114 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Lus10029525 [exp] 281 / 5e-93 AT3G57670 297 / 1e-99 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10039613 [exp] 276 / 7e-91 AT3G57670 300 / 9e-101 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Lus10020923 [exp] 271 / 5e-89 AT1G34790 312 / 2e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Lus10033454 [exp] 270 / 2e-88 AT1G34790 315 / 1e-107 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G183900 [exp] 375 / 2e-129 AT1G08290 352 / 4e-121 WIP domain protein 3 (.1) Potri.009G143700 [exp] 373 / 1e-128 AT1G08290 364 / 7e-126 WIP domain protein 3 (.1) Potri.003G205000 [exp] 311 / 3e-104 AT3G57670 377 / 2e-130 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.016G052700 [exp] 306 / 5e-102 AT3G57670 389 / 7e-135 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.009G062300 [exp] 301 / 2e-100 AT3G57670 336 / 3e-114 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.001G018900 [exp] 300 / 6e-100 AT1G51220 353 / 7e-122 WIP domain protein 5 (.1) Potri.001G267900 [exp] 300 / 6e-100 AT3G57670 328 / 2e-111 WIP domain protein 2, NO TRANSMITTING TRACT, C2H2-type zinc finger family protein (.1) Potri.010G129000 [exp] 284 / 2e-94 AT1G13290 352 / 1e-122 WIP domain protein 6, DEFECTIVELY ORGANIZED TRIBUTARIES 5, C2H2-like zinc finger protein (.1) Potri.002G098200 [exp] 270 / 1e-88 AT1G34790 311 / 3e-106 WIP domain protein 1, transparent testa 1, C2H2 and C2HC zinc fingers superfamily protein (.1) Potri.019G085400 [exp] 110 / 3e-26 AT1G34370 478 / 1e-165 sensitive to proton rhizotoxicity 1, C2H2 and C2HC zinc fingers superfamily protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020597 pacid=23172336 polypeptide=Lus10020597 locus=Lus10020597.g ID=Lus10020597.BGIv1.0 annot-version=v1.0 ATGGGACTAAGAGACTTGTATCATCTAACACAAACACCTAATTCAACTCATCCTCCAACTTTCATAGAATGGCTCAAGCCGTCTTCTTTGATTTCGGATC ACAATCATTATCCTCCTTTCCTAGGTCAACAAGTTCATGATCATCACCACATCATGGCCATCTACCCTCAAAAGGAGGAGGAGGAGGAGGAGAAAGAAGA AGAAAAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGAAGCATCCATCAAGTGTCTACCACTACTAAGCAAGCTCATGAGCACCCAAGAA CACCACAACCACAAAGATTGCAACTTTAAGATCAAGGATGACCCAATAAAAGAACGGTTAGATCAGAAATCAGAAGCTGAAGTAGAAGATATGGAGGTCA CGAGTTCGATTCATGTTGTTAGTGCTACTAACAACTATAGTACTAGTAGCAACAACACTTCTAGTACAAGTGTTGAAGTGAAGCAAGAGGTGAAGATGTT GGATGATGAGGAAGTCATTGTGGGTTTGCACATTGGGTTACCTAATAAGAACAACAAGATGCTTCAGTTGAAGGAGCCCAAGATGGTAAATTATGGTGGC AATTTGGAAAGGAAGAGCTCAATCAATAGAGAGAATAGGTTTTGGATCCCAACTCCAGCTCATATTCTTGTTGGACCTATGCAATTTGCTTGCTCAATTT GTAGCAAGACCTTCAATAGGTACAACAATATGCAGATGCACATGTGGGGCCATGGGTCCGAGTTCAGGAAGGGTCCAGACTCGCTGAAGGGAACTCAACC GACCGCAATGATGAGGCTTCCGTGTTATTGTAGCGCTCAGGGTTGCAAGAACAACATAAACCACCCGCGAGCCAAGCCATTGAAGGACTTTCGGACCCTT CAAACTCATTACAAAAGGAAGCATGGCTCCAAGGTCTTTAGCTGTCGAAAATGTGGTAAGACTTTCGCAGTCAAGGGAGACTGGAGGACCCACGAGAAGA ATTGTGGGAAGCTATGGTATTGTACTTGTGGGTCCGATTTTAAGCACAAGAGATCCTTGAAGGACCACATAAGGTCCTTTGGAAAGAGTCATTCTCCCCA CCCTTCTCTCGAAGGGTTTGAGGATGAGAAGGAGTGTGTCACAAGTACTGGATCAGACGATGATTTTACATGCAGCTGA
AA sequence Show only first row Show all	>Lus10020597 pacid=23172336 polypeptide=Lus10020597 locus=Lus10020597.g ID=Lus10020597.BGIv1.0 annot-version=v1.0 MGLRDLYHLTQTPNSTHPPTFIEWLKPSSLISDHNHYPPFLGQQVHDHHHIMAIYPQKEEEEEEKEEEKEEEEEEEEEEEEEEASIKCLPLLSKLMSTQE HHNHKDCNFKIKDDPIKERLDQKSEAEVEDMEVTSSIHVVSATNNYSTSSNNTSSTSVEVKQEVKMLDDEEVIVGLHIGLPNKNNKMLQLKEPKMVNYGG NLERKSSINRENRFWIPTPAHILVGPMQFACSICSKTFNRYNNMQMHMWGHGSEFRKGPDSLKGTQPTAMMRLPCYCSAQGCKNNINHPRAKPLKDFRTL QTHYKRKHGSKVFSCRKCGKTFAVKGDWRTHEKNCGKLWYCTCGSDFKHKRSLKDHIRSFGKSHSPHPSLEGFEDEKECVTSTGSDDDFTCS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08290	C2H2ZnF	WIP3	WIP domain protein 3 (.1)		Lus10020597 [exp]	0	1
AT5G16550			unknown protein		Lus10002085 [exp]	1.4	0.9078
AT5G06060			NAD(P)-binding Rossmann-fold s...		Lus10016497 [exp]	2.8	0.8786
AT5G35732			unknown protein		Lus10006404 [exp]	3.0	0.8930
AT2G01620		MEE11	maternal effect embryo arrest ...		Lus10007930 [exp]	5.3	0.8868
AT2G18060	NAC	ANAC037, VND1	Arabidopsis NAC domain contain...		Lus10028372 [exp]	5.8	0.8653
AT1G78380		GST8, ATGSTU19	GLUTATHIONE TRANSFERASE 8, A. ...		Lus10026198 [exp]	5.9	0.8832
AT3G26330		CYP71B37	"cytochrome P450, family 71, s...		Lus10016599 [exp]	6.3	0.9021
AT2G32120		HSP70T-2	heat-shock protein 70T-2 (.1.2...		Lus10021920 [exp]	8.1	0.8801
AT1G55790			Domain of unknown function (DU...		Lus10000235 [exp]	8.8	0.8795
AT4G05200		CRK25	cysteine-rich RLK (RECEPTOR-li...		Lus10012655 [exp]	9.9	0.8668

Compare expression of checked genes

Lus10020597 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.