Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G21720 355 / 5e-127 PBC1 proteasome beta subunit C1 (.1) AT1G77440 351 / 4e-125 PBC2 20S proteasome beta subunit C2 (.1.2) AT3G60820 74 / 3e-16 PBF1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) AT4G31300 42 / 0.0001 PBA1 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004885 [exp] 396 / 5e-143 AT1G21720 356 / 2e-127 proteasome beta subunit C1 (.1) Lus10015867 [exp] 79 / 6e-18 AT3G60820 379 / 2e-135 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Lus10009294 [exp] 76 / 6e-16 AT1G48050 835 / 0.0 ARABIDOPSIS THALIANA KU80 HOMOLOG, Ku80 family protein (.1) Lus10006426 [exp] 62 / 2e-11 AT3G26340 462 / 7e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Lus10011369 [exp] 62 / 2e-11 AT3G26340 465 / 1e-167 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G180500 [exp] 356 / 4e-127 AT1G21720 391 / 9e-141 proteasome beta subunit C1 (.1) Potri.002G080800 [exp] 352 / 8e-126 AT1G21720 383 / 1e-137 proteasome beta subunit C1 (.1) Potri.002G148300 [exp] 73 / 5e-16 AT3G60820 387 / 2e-138 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.014G069800 [exp] 70 / 8e-15 AT3G60820 362 / 6e-129 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.008G177000 [exp] 64 / 2e-12 AT3G26340 473 / 7e-171 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1) Potri.018G145900 [exp] 42 / 6e-05 AT4G31300 405 / 3e-145 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3) Potri.006G077900 [exp] 39 / 0.0007 AT4G31300 416 / 2e-149 N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.1), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.2), N-terminal nucleophile aminohydrolases (Ntn hydrolases) superfamily protein (.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0052 [flax] [poplar] NTN PF00227 [flax] [poplar] Proteasome Proteasome subunit
Representative CDS sequence Show only first row Show all	>Lus10020599 pacid=23172316 polypeptide=Lus10020599 locus=Lus10020599.g ID=Lus10020599.BGIv1.0 annot-version=v1.0 ATGGTGGGGAAGAACTGCTTTGCTATAGCTAGCGATCGCCGATTGGGAGTCCAGCTCCAGACTGTCGCCACGGATTTCCAGCGCATCTACAAAATTCACG ACAAGCTCTTCTTCGGGCTTTCTGGCTTGGCCTCCGACGCTCAGACTTTGCATCAGAGGCTGATGTTCCGCCATAAGCTGTATCAGCTGAGGGAAGAGAG GGATATGAAGCCTGAGACTTTCTCCAGCCTTGTCTCCGCTATTCTTTATGAGAAAAGGTTTGGTCCATATTTCGTCCAACCTGTAATTGCTGGACTAAGC GATGATGATCAGCCATTCATTTGTACGATGGATGCTATTGGTGCTAAGGAATTGGCAAAAGATTTTGTCGTTGGAGGCACAGCTGGAGAGTCTCTTTATG GTGCTTGTGAGGCAATGTTCAAGCCTGACATGGAACCCGAGGAGTTATTCGAAACTCTGTCACAAGCGCTTTTGGCTTCAGTGGATCGAGATTGTCTAAG TGGATGGGGAGGACACATCTATCTTGTTACCCCAACTGAGATCAAAGAATGCACCTTGAAGGGAAGGATGGACTGA
AA sequence Show only first row Show all	>Lus10020599 pacid=23172316 polypeptide=Lus10020599 locus=Lus10020599.g ID=Lus10020599.BGIv1.0 annot-version=v1.0 MVGKNCFAIASDRRLGVQLQTVATDFQRIYKIHDKLFFGLSGLASDAQTLHQRLMFRHKLYQLREERDMKPETFSSLVSAILYEKRFGPYFVQPVIAGLS DDDQPFICTMDAIGAKELAKDFVVGGTAGESLYGACEAMFKPDMEPEELFETLSQALLASVDRDCLSGWGGHIYLVTPTEIKECTLKGRMD

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G21720		PBC1	proteasome beta subunit C1 (.1...		Lus10020599 [exp]	0	1
AT3G19760		EIF4A-III	eukaryotic initiation factor 4...		Lus10010206 [exp]	5.1	0.7927
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10011640 [exp]	6.2	0.7832
AT5G23535			KOW domain-containing protein ...		Lus10006905 [exp]	10.5	0.7937
AT1G56450		PBG1	20S proteasome beta subunit G1...		Lus10036124 [exp]	12.7	0.8254
AT3G25230		ROF1, ATFKBP62	FK506 BINDING PROTEIN 62, rota...		Lus10038216 [exp]	27.9	0.8017
AT5G23540			Mov34/MPN/PAD-1 family protein...		Lus10031085 [exp]	30.3	0.8120
AT1G23100			GroES-like family protein (.1)		Lus10036055 [exp]	37.5	0.8013
AT5G59440		ATTMPK.2, ATTMP...	ZEUS1, ARABIDOPSIS THALIANA TH...		Lus10035500 [exp]	41.0	0.7560
AT5G20720		CHCPN10, ATCPN2...	CHLOROPLAST CHAPERONIN 10, cha...		Lus10021244 [exp]	43.0	0.7135
AT1G60770			Tetratricopeptide repeat (TPR)...		Lus10029115 [exp]	49.0	0.8013

Compare expression of checked genes

Lus10020599 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.