Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27550 263 / 3e-91 ATC centroradialis (.1) AT5G03840 253 / 2e-87 TFL-1, TFL1 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT5G62040 218 / 3e-73 BFT brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G65480 190 / 2e-62 FT FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT4G20370 174 / 5e-56 TSF TWIN SISTER OF FT, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) AT1G18100 172 / 4e-55 MFT, E12A11 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004884 [exp] 300 / 2e-105 AT2G27550 218 / 3e-73 centroradialis (.1) Lus10004886 [exp] 285 / 2e-99 AT2G27550 267 / 2e-92 centroradialis (.1) Lus10043385 [exp] 275 / 9e-96 AT2G27550 259 / 2e-89 centroradialis (.1) Lus10027442 [exp] 249 / 2e-85 AT5G62040 248 / 4e-85 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10021372 [exp] 245 / 6e-84 AT5G03840 267 / 1e-92 TERMINAL FLOWER 1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10005753 [exp] 241 / 6e-82 AT5G62040 241 / 5e-82 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10019541 [exp] 209 / 7e-70 AT2G27550 188 / 5e-62 centroradialis (.1) Lus10013532 [exp] 196 / 2e-64 AT1G65480 278 / 6e-97 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Lus10004452 [exp] 191 / 6e-60 AT1G65480 270 / 1e-90 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G165100 [exp] 273 / 4e-95 AT2G27550 293 / 7e-103 centroradialis (.1) Potri.004G203900 [exp] 268 / 2e-93 AT2G27550 286 / 4e-100 centroradialis (.1) Potri.008G077700 [exp] 197 / 6e-65 AT1G65480 257 / 8e-89 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179700 [exp] 189 / 6e-62 AT1G65480 286 / 2e-100 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G041000 [exp] 176 / 1e-56 AT1G18100 291 / 2e-102 MOTHER OF FT AND TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.015G141300 [exp] 171 / 3e-55 AT5G62040 217 / 1e-73 brother of FT and TFL1, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179900 [exp] 97 / 2e-26 AT1G65480 132 / 6e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1) Potri.010G179801 [exp] 96 / 2e-26 AT1G65480 133 / 3e-41 FLOWERING LOCUS T, PEBP (phosphatidylethanolamine-binding protein) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01161 [flax] [poplar] PBP Phosphatidylethanolamine-binding protein
Representative CDS sequence Show only first row Show all	>Lus10020600 pacid=23172274 polypeptide=Lus10020600 locus=Lus10020600.g ID=Lus10020600.BGIv1.0 annot-version=v1.0 ATGGGGAAAGTAGTGTCAGATCCACTTGTGGTTGGGAGAGTGATTGGAGATGTCATTGATTGCTTCAACCCAAGTGTTAAGATGAGTGTCACTTACAATA AGCAAGTATTTAATGGCCATGAGTTCTTCCCTTCTGCTCTCTCCCTCAAGCCCAAAGTTGATGTCCTTGGTGGTGATCTCAGATCCCTTTTCACCCTCGT GATGACGGATCCAGATGTTCCAGGGCCTAGTGATCCATACTTGAGAGAACACTTACACTGGATAGTGACTGATATTCCAGGGACTACTGATGCAACCTTT GGGAAGGAAGTGGTTAGCTACGAGATGCCAAAGCCGATCATAGGGATCCATAGGTTCGTGTTGGTGCTCTTCAAACAGAAGACAAGAGGCCAATTGTCTA GTGGTAATGTTTCGACATCAAGGGACAACTTCAATACCAGGAAGTTTGCTCAAAGCAATAATCTTGGCCCTCCTGTTGCTGCTGTTTTCTTCAATGCTCA AAGAGAAACTGCAGCTAGGCGGCGCTAG
AA sequence Show only first row Show all	>Lus10020600 pacid=23172274 polypeptide=Lus10020600 locus=Lus10020600.g ID=Lus10020600.BGIv1.0 annot-version=v1.0 MGKVVSDPLVVGRVIGDVIDCFNPSVKMSVTYNKQVFNGHEFFPSALSLKPKVDVLGGDLRSLFTLVMTDPDVPGPSDPYLREHLHWIVTDIPGTTDATF GKEVVSYEMPKPIIGIHRFVLVLFKQKTRGQLSSGNVSTSRDNFNTRKFAQSNNLGPPVAAVFFNAQRETAARRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27550		ATC	centroradialis (.1)		Lus10020600 [exp]	0	1
					Lus10021851 [exp]	3.5	0.9688
					Lus10012440 [exp]	4.9	0.9688
AT5G19875			unknown protein		Lus10006311 [exp]	5.3	0.9312
AT1G02520		MDR8, ABCB11, P...	multi-drug resistance 8, ATP-b...		Lus10004530 [exp]	6.0	0.9688
					Lus10008791 [exp]	6.9	0.9688
					Lus10031183 [exp]	7.4	0.9663
AT3G45740			hydrolase family protein / HAD...		Lus10040363 [exp]	7.5	0.8612
AT5G02920			F-box/RNI-like superfamily pro...		Lus10035325 [exp]	8.5	0.9647
AT5G58380		PKS2, CIPK10, S...	SNF1-RELATED PROTEIN KINASE 3....		Lus10030546 [exp]	9.2	0.9610
					Lus10026713 [exp]	9.8	0.9603

Compare expression of checked genes

Lus10020600 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.