Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G08540 604 / 0 DNA-directed RNA polymerase II protein (.1) AT1G77890 335 / 3e-110 DNA-directed RNA polymerase II protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004883 [exp] 961 / 0 AT4G08540 638 / 0.0 DNA-directed RNA polymerase II protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G090900 [exp] 723 / 0 AT4G08540 652 / 0.0 DNA-directed RNA polymerase II protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020601 pacid=23172297 polypeptide=Lus10020601 locus=Lus10020601.g ID=Lus10020601.BGIv1.0 annot-version=v1.0 ATGAGCAAGCAAAAGTCGAGTAGCTGTGGAATCTGTGAGAATACGAATCGTGCTTCCGTTTGTGCAGTTTGTGTCAATTACAGGTTGAATGAATTCAGCA ATCTATTGAAATCGTTGAATATCCGTAGGGATTCCCTGTATTCTAGACTAAGTGAATTCCTTGTGGCGAAGGGGAAATCAGATGATCAGTTAAATTGGAG AGTAAAACACAATGAGAAGGTTGTGAGTTTGAAGGAGAAGCTCCGTAGGAGTAAAGAACGATTAGTTCAAGGGAAGAGTAAGGTTGAGAGGATGTCCTAC GATCTAAAGCTCAAGTATGGTGTCCTCGATTCCACTTGTGCTTTGTTGGAGAAGAACCGCGTGGAGCAACTTGAAAAGTTCTATCCGAACCTTATTTGCA CTCAGAGTTTGGGCCATATGGCTATTACCTCTGAACTATTTCATAAACAGTCTGTAGTCATAAAACAGATATGCAAATTGCTGCCTCAACGGAAGGTGAA AATTGACGGGGAGAGAACCAGTGGTCAGTTCGATCAAATATGCAATGCACGCTTACCAAGAGGACTTGACCCCCACTCTGTTCCAGTGGTAGAGCTTGGT GCCTCGTTGGGATATATGGTGCAGCTTCTGAATCTTGTTGTTCGTAACTTGGCTGCCCCTGCACTTCATAACTCCGGTTTTGCGGTTAGTTCAGCTGTGT CTCTTATTGGTTTGTTCCCTGCAGAGCTCCTTTTCCTTCCTATTATGGATTTTGGACAAACAATTGGCTCTAGCTCTCGAATATGGCAGCGAGATTCTTA TTGGAATGCACGCCCCTCATCAAGAAGCAATGAATATCCCCTATTCATACCCCGCCAGAATTATTGCTCGACGAGTGGAGAAAATTCGGTTACCGAGTCT GATAAAAGCTCAAGTAACTTCGGCGTGTCATCAATAGAGTCAGAAAGAAAGGCGTATCTCGATTCTTCTCGGAACAGTAGCTTTAACTACTCATCAGCCT CTCCACATTCAGTCGAAACACATGAGGACTTGCAGAAAGGGATTGCACTTCTGAAGAAAAGTGTGGCTTGTATGACCGCATATTGTTACAACATGCTGTG CTTAGAGATTCCTTCCGAGACATCTACCTTTGAAGCCTTTGCAAGACTTTTGTCGACGCTTTCTTCTTCAAAGGAAGTCCGGTCGGTTTTCTCCTTGAAA ATGGCTTGTTCAAGGTCAGGTAAACAGGTTCAGAAAATGAACAAATCAGTGTGGAACGTAAATTCAGCAATTTCGTCAAGCGGTTTACTTGAAAGTGCAC ATGCTCTGCATCTAACGAAGAACATTGGTGAATACAACCTCCTAAATTCAACAACCAGTTTCCTCTACGCCTCGGAGAGACCAGAGGCAGGGAAATACGA GAGCCTCATCGATGGATGGGACCTAGTGGAACACCCTAAATTCCCTCCGCCTCCCTCGCAGACCGAAGACATCGAGCACTGGACTCGTGCCATGTTCATC GACGTGGCCAAGAAGAAGTAG
AA sequence Show only first row Show all	>Lus10020601 pacid=23172297 polypeptide=Lus10020601 locus=Lus10020601.g ID=Lus10020601.BGIv1.0 annot-version=v1.0 MSKQKSSSCGICENTNRASVCAVCVNYRLNEFSNLLKSLNIRRDSLYSRLSEFLVAKGKSDDQLNWRVKHNEKVVSLKEKLRRSKERLVQGKSKVERMSY DLKLKYGVLDSTCALLEKNRVEQLEKFYPNLICTQSLGHMAITSELFHKQSVVIKQICKLLPQRKVKIDGERTSGQFDQICNARLPRGLDPHSVPVVELG ASLGYMVQLLNLVVRNLAAPALHNSGFAVSSAVSLIGLFPAELLFLPIMDFGQTIGSSSRIWQRDSYWNARPSSRSNEYPLFIPRQNYCSTSGENSVTES DKSSSNFGVSSIESERKAYLDSSRNSSFNYSSASPHSVETHEDLQKGIALLKKSVACMTAYCYNMLCLEIPSETSTFEAFARLLSTLSSSKEVRSVFSLK MACSRSGKQVQKMNKSVWNVNSAISSSGLLESAHALHLTKNIGEYNLLNSTTSFLYASERPEAGKYESLIDGWDLVEHPKFPPPPSQTEDIEHWTRAMFI DVAKKK

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G08540			DNA-directed RNA polymerase II...		Lus10020601 [exp]	0	1
AT3G45630			RNA binding (RRM/RBD/RNP motif...		Lus10018125 [exp]	4.0	0.8881
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10011134 [exp]	5.5	0.8800
AT2G19710			Regulator of Vps4 activity in ...		Lus10000978 [exp]	6.0	0.8688
AT1G32810			RING/FYVE/PHD zinc finger supe...		Lus10001662 [exp]	6.3	0.8709
AT1G32750		GTD1, TAF1, HAF...	TBP-ASSOCIATED FACTOR 1, HISTO...		Lus10027579 [exp]	8.5	0.8795
AT4G29380		AtVPS15	Arabidopsis thaliana vacuolar ...		Lus10043037 [exp]	9.6	0.8751
AT3G48195			Phox (PX) domain-containing pr...		Lus10001232 [exp]	13.7	0.8590
AT5G42940			RING/U-box superfamily protein...		Lus10018725 [exp]	16.1	0.8419
AT3G49490			unknown protein		Lus10015581 [exp]	16.3	0.8416
AT2G15900			Phox-associated domain;Phox-li...		Lus10023847 [exp]	19.6	0.8399

Compare expression of checked genes

Lus10020601 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.