Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22460 214 / 9e-69 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G48410 191 / 2e-59 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 181 / 1e-55 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 179 / 7e-55 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 179 / 8e-55 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 172 / 1e-52 alpha/beta-Hydrolases superfamily protein (.1) AT1G74290 173 / 2e-52 alpha/beta-Hydrolases superfamily protein (.1) AT3G03230 167 / 9e-51 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 156 / 4e-46 alpha/beta-Hydrolases superfamily protein (.1) AT1G08310 134 / 8e-38 alpha/beta-Hydrolases superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004880 [exp] 340 / 8e-118 AT5G22460 439 / 7e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004882 [exp] 231 / 1e-75 AT5G22460 345 / 1e-118 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10043437 [exp] 192 / 4e-60 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10017051 [exp] 192 / 7e-60 AT3G48410 489 / 1e-173 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 191 / 1e-59 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10028860 [exp] 189 / 1e-58 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Lus10021371 [exp] 189 / 2e-58 AT3G48410 473 / 2e-167 alpha/beta-Hydrolases superfamily protein (.1) Lus10008968 [exp] 188 / 3e-58 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10022722 [exp] 185 / 7e-57 AT3G48410 429 / 4e-150 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203700 [exp] 251 / 4e-83 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164900 [exp] 210 / 5e-67 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237800 [exp] 191 / 1e-59 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237700 [exp] 190 / 2e-59 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 187 / 3e-58 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 186 / 9e-58 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 177 / 1e-53 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.009G164600 [exp] 157 / 2e-46 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.008G021301 [exp] 62 / 2e-12 AT1G74300 65 / 2e-13 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 62 / 6e-11 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020603 pacid=23172358 polypeptide=Lus10020603 locus=Lus10020603.g ID=Lus10020603.BGIv1.0 annot-version=v1.0 ATGCAACCAAGCAAAAAGATCTCAGCTTCATCAGCCAGAGCTCACACCAGAAGAAGAAACAGTAACAGCAGCACACAACCAAAAGCTGTGGCGGTAACGG TGGGATTTCTGGGATGGGTTTATCAGTACTCATTGAAACCTCCACCTCCCAGAATCTGTGGTTCAGTTAGTGGCCCTGAAATCACTTCTCCTAGAGTGAA GCTTCGTGATGGGAGGCATTTGACTTACAAGGAAGTGGGAGTTTCCAAGGAAGAAGCTAAGCATAAGATTATCATCATTCATGGCTTTGATGCTGATCCA TACCCGTCACGATCAGTAAAGAGCGAAGCCTACGACATCGAAGAACTTGCTGATAAGCTGCAGATCGGTCCCAAGTTTTATGTCATTGGGATCTCAATGG GAGGCTATCCGGATTACACTTGTCTGAAATACATACCACATAGGCTGGCTGGAGTGGCTCTGGTGGTCCCATTTGTGCACTATTGGTGGCCTTGTCTTCC TCCGGACCTGTCAAGGCTCGGGCTGCAGAGGCTTCTTCCGATGGACCGTAGGACGTTCTATGTTGCACACTATGCACCTTGGCTGTTCTATTGGTGGATG TCTCAGAAATGGTTTCCTTCATTGAGCATGATAGCGGGAACATGGTTGTTTTCTCCCCTCAAGATATGGAGATGA
AA sequence Show only first row Show all	>Lus10020603 pacid=23172358 polypeptide=Lus10020603 locus=Lus10020603.g ID=Lus10020603.BGIv1.0 annot-version=v1.0 MQPSKKISASSARAHTRRRNSNSSTQPKAVAVTVGFLGWVYQYSLKPPPPRICGSVSGPEITSPRVKLRDGRHLTYKEVGVSKEEAKHKIIIIHGFDADP YPSRSVKSEAYDIEELADKLQIGPKFYVIGISMGGYPDYTCLKYIPHRLAGVALVVPFVHYWWPCLPPDLSRLGLQRLLPMDRRTFYVAHYAPWLFYWWM SQKWFPSLSMIAGTWLFSPLKIWR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22460			alpha/beta-Hydrolases superfam...		Lus10020603 [exp]	0	1
AT1G67120			ATPases;nucleotide binding;ATP...		Lus10037616 [exp]	2.0	0.8195
AT1G25375			Metallo-hydrolase/oxidoreducta...		Lus10005109 [exp]	3.7	0.7796
AT3G23910			unknown protein		Lus10022568 [exp]	4.5	0.7682
AT1G01020		ARV1	Arv1-like protein (.1.2)		Lus10007219 [exp]	8.1	0.7587
AT5G11910			alpha/beta-Hydrolases superfam...		Lus10013517 [exp]	9.4	0.7492
AT2G31450		ATNTH1	DNA glycosylase superfamily pr...		Lus10000431 [exp]	10.2	0.7584
AT2G36110			Polynucleotidyl transferase, r...		Lus10029479 [exp]	10.6	0.7478
AT4G27080		ATPDI7, ATPDIL5...	ARABIDOPSIS THALIANA PROTEIN D...		Lus10019611 [exp]	11.2	0.7296
AT2G36410			Family of unknown function (DU...		Lus10023876 [exp]	14.3	0.7758
AT1G62350			Pentatricopeptide repeat (PPR)...		Lus10000892 [exp]	15.0	0.7510

Compare expression of checked genes

Lus10020603 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.