Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G44510 405 / 7e-142 alpha/beta-Hydrolases superfamily protein (.1.2) AT1G08310 375 / 2e-130 alpha/beta-Hydrolases superfamily protein (.1.2) AT5G22460 290 / 1e-96 alpha/beta-Hydrolases superfamily protein (.1.2) AT3G03230 277 / 2e-91 alpha/beta-Hydrolases superfamily protein (.1) AT2G36290 274 / 7e-90 alpha/beta-Hydrolases superfamily protein (.1) AT3G48410 268 / 3e-87 alpha/beta-Hydrolases superfamily protein (.1) AT3G03240 265 / 6e-87 alpha/beta-Hydrolases superfamily protein (.1) AT1G74300 259 / 5e-84 alpha/beta-Hydrolases superfamily protein (.1) AT1G74280 250 / 2e-80 alpha/beta-Hydrolases superfamily protein (.1) AT3G54240 246 / 7e-79 alpha/beta-Hydrolases superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004879 [exp] 668 / 0 AT3G44510 409 / 3e-142 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10004880 [exp] 300 / 1e-99 AT5G22460 439 / 7e-155 alpha/beta-Hydrolases superfamily protein (.1.2) Lus10008968 [exp] 287 / 6e-95 AT2G36290 442 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1) Lus10043449 [exp] 284 / 4e-94 AT3G48410 395 / 2e-137 alpha/beta-Hydrolases superfamily protein (.1) Lus10034135 [exp] 283 / 1e-93 AT3G48410 396 / 9e-138 alpha/beta-Hydrolases superfamily protein (.1) Lus10018549 [exp] 281 / 8e-93 AT2G36290 434 / 8e-153 alpha/beta-Hydrolases superfamily protein (.1) Lus10039775 [exp] 278 / 2e-91 AT2G36290 425 / 3e-149 alpha/beta-Hydrolases superfamily protein (.1) Lus10043437 [exp] 276 / 1e-90 AT2G36290 429 / 5e-151 alpha/beta-Hydrolases superfamily protein (.1) Lus10034148 [exp] 273 / 2e-89 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164600 [exp] 497 / 5e-178 AT3G44510 440 / 5e-156 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.009G164900 [exp] 335 / 5e-114 AT5G22460 374 / 1e-129 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.004G203700 [exp] 329 / 1e-111 AT5G22460 434 / 2e-153 alpha/beta-Hydrolases superfamily protein (.1.2) Potri.010G237700 [exp] 279 / 5e-92 AT2G36290 452 / 6e-160 alpha/beta-Hydrolases superfamily protein (.1) Potri.010G237800 [exp] 273 / 7e-90 AT2G36290 436 / 1e-153 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021400 [exp] 271 / 7e-89 AT2G36290 446 / 2e-157 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021200 [exp] 270 / 2e-88 AT2G36290 433 / 1e-152 alpha/beta-Hydrolases superfamily protein (.1) Potri.008G021000 [exp] 267 / 7e-87 AT2G36290 441 / 5e-155 alpha/beta-Hydrolases superfamily protein (.1) Potri.006G131300 [exp] 124 / 3e-31 AT5G02970 658 / 0.0 alpha/beta-Hydrolases superfamily protein (.1) Potri.016G086200 [exp] 122 / 8e-31 AT5G02970 653 / 0.0 alpha/beta-Hydrolases superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0028 [flax] [poplar] AB_hydrolase PF00561 [flax] [poplar] Abhydrolase_1 alpha/beta hydrolase fold
Representative CDS sequence Show only first row Show all	>Lus10020606 pacid=23172281 polypeptide=Lus10020606 locus=Lus10020606.g ID=Lus10020606.BGIv1.0 annot-version=v1.0 ATGGCGTCGACGACGGCGGTGGTTTTGATGATTGGTTTACTGGGTATGGTTTATCAGGCGACGCAGCTTTCTCCTCCGCCGCAGCAGCAGCAGCAGGCTG ATCGGAAGGGTGAAGATCAGGCTGCCGACAGTGGTGATTCGGCGAGAATCAAGCTCAGTGATGGGAGGTACTTGGCTTACAGGGAGAAAGGGGTCCCTTT AAGTAAAGCTAAATACAAAATCGTTCTTGTCCATGGATTTGGAAGCTCCAAGGAGATGAACTTCTTGGCTCCTCAAGAATTAATAGAAGAGTTGGAGATC TGTTTCTTGATATACGACCGAGCCGGGTACGGAGAGAGTGACCCAAACCCGACTAGATCCGTAAAGAGTGAGGCTTTAGACATTGAAGAGCTTGCTGACC AACTCGAGCTAGGATCGAAGTTCTACGTCATTGGTGTCTCCATGGGATCCTATCCGGTTTGGAGTTGCCTCAAGTACATCCCTGACAGGCAAGTGCTAAA AGGTGCAGCATTGATCGTCCCGGTTGTGAATTACAAGTGGACTTCTCTTCCTAGAAGTCTCATAAGAGATGACTATAGGAGAAGACTTGTACAGTTGACA TACTGGTTTTCATACTATGCACCGGGGCTGTTACACTGGTGGGTTACCCAAAACTGGCTCCCTTCGAGCTCTGTCCTCGAAAGGAACCGGATGTTCTTCA ACCCTCACGACATTGAGGTCTTGAAGAAGATACCTGGGTTCCCAATGCTAAGCAAGAAGAAGTTAGTCGAGCGCGAGGTGTTCGACACTCTCCGTCACGA TTTCATGGTGGGTTTCGGGGACTGGGAGTTCGATCCAACGGAGCTGAAGAACCGGTCTCCTACTTCGAACGAAAGCAACGTTCACATCTGGCAAGGCTAT GAGGACAGGGTTGTCCCGTTTCAGCTGCAGAGGTTCATCTCGGGGAAGCTGCCGTGGATTCGATACCACGAAGTCCCGGAAGGCGGACACTTGATTGTGC ACTACAGTGGGTTAGGTGAAGCTGTTTTGAAGTCACTCTTGCTTGGGGAAGAGCCTCTTACTCTAGATCATGTACAACCATAG
AA sequence Show only first row Show all	>Lus10020606 pacid=23172281 polypeptide=Lus10020606 locus=Lus10020606.g ID=Lus10020606.BGIv1.0 annot-version=v1.0 MASTTAVVLMIGLLGMVYQATQLSPPPQQQQQADRKGEDQAADSGDSARIKLSDGRYLAYREKGVPLSKAKYKIVLVHGFGSSKEMNFLAPQELIEELEI CFLIYDRAGYGESDPNPTRSVKSEALDIEELADQLELGSKFYVIGVSMGSYPVWSCLKYIPDRQVLKGAALIVPVVNYKWTSLPRSLIRDDYRRRLVQLT YWFSYYAPGLLHWWVTQNWLPSSSVLERNRMFFNPHDIEVLKKIPGFPMLSKKKLVEREVFDTLRHDFMVGFGDWEFDPTELKNRSPTSNESNVHIWQGY EDRVVPFQLQRFISGKLPWIRYHEVPEGGHLIVHYSGLGEAVLKSLLLGEEPLTLDHVQP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G44510			alpha/beta-Hydrolases superfam...		Lus10020606 [exp]	0	1
AT3G22830	HSF	AT-HSFA6B	ARABIDOPSIS THALIANA HEAT SHOC...		Lus10000049 [exp]	8.1	0.8866
AT1G70770			Protein of unknown function DU...		Lus10003709 [exp]	9.5	0.9046
AT3G52850		VSR1;1, GFS1, B...	VACUOLAR SORTING RECEPTOR 1;1,...		Lus10022737 [exp]	21.0	0.8774
AT3G10120			unknown protein		Lus10039676 [exp]	27.2	0.8809
AT1G72890			Disease resistance protein (TI...		Lus10042020 [exp]	29.3	0.8855
AT1G31910			GHMP kinase family protein (.1...		Lus10012121 [exp]	31.1	0.8688
AT1G65930		cICDH	cytosolic NADP+-dependent isoc...		Lus10020798 [exp]	32.9	0.8832
AT1G27340			Galactose oxidase/kelch repeat...		Lus10037030 [exp]	36.0	0.8751
AT1G70770			Protein of unknown function DU...		Lus10001593 [exp]	37.7	0.8791
AT5G24430			Calcium-dependent protein kina...		Lus10008875 [exp]	39.8	0.8626

Compare expression of checked genes

Lus10020606 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.