Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22450 870 / 0 unknown protein AT2G19390 278 / 6e-77 unknown protein AT4G29790 198 / 3e-51 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004878 [exp] 2250 / 0 AT5G22450 916 / 0.0 unknown protein Lus10000530 [exp] 121 / 6e-31 AT5G22450 71 / 3e-14 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203500 [exp] 1337 / 0 AT5G22450 958 / 0.0 unknown protein Potri.009G164400 [exp] 1271 / 0 AT5G22450 952 / 0.0 unknown protein Potri.010G238400 [exp] 709 / 0 AT5G22450 513 / 8e-161 unknown protein Potri.008G020600 [exp] 691 / 0 AT5G22450 543 / 2e-172 unknown protein Potri.018G056400 [exp] 271 / 2e-74 AT2G19390 1022 / 0.0 unknown protein Potri.006G146600 [exp] 209 / 7e-55 AT2G19390 1068 / 0.0 unknown protein Potri.006G146700 [exp] 65 / 2e-11 AT4G29790 203 / 2e-60 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020607 pacid=23172376 polypeptide=Lus10020607 locus=Lus10020607.g ID=Lus10020607.BGIv1.0 annot-version=v1.0 ATGTTTGGCTCGGGGAGCAGTTTGAGTCGGGGTAATGCCACGTCACCATTGGATATGCCACCTTTGACGGAGTGCTTACCTTTGGAGCCGATCACGTTAG GTGGCCACAAATTCACTCGTTCTGGAGAAATAAGGCGGGCTTTGGGTTTCGGAAGTGCTTCTGAGGACCTTTCGTTTGGACTTGCTCATCCAAAACCTTC CCCTGCTGTTGCAACAGAAGAGCTAAAGGTGTTTAAAGAAAGTGTGCAGGATACTAATAGAAAGGCCAGGGATAGATCAAAGCTGCTGAAGGACTCAATA ATCAAATTGGAAAAGTATAGGGAAGTATTAACCTCCAAGAAGCGTCAGAGAAGTGATTTTTCTGTGGGTGAGAGACCGAATGGATCAAATTTAGCAAAAA TGGGGAGTCAGATCCACCGAAGCCCTCATGATGGTATGCCACAAAGACTGGAGGATCGGGCCAAAAGTATTGGCCTAAATAAGCGTGTTCGTACGTCTGT GGCTGATGTGAGGGCAGACATACGGAGCAGCCCTAGCCCAAGGCAGCAGATGGTAATGGAAAAGGGTGCAGATGTGCTTCTAGATGTTGGCGGGGGTGGG GCTCGTTTTGAAGAAAAGATTCGCAGATTGCCTGCAGGAGGTGAAGGATGGGATACCAAGAATAAAAAGAAGCGTTCTGTTGGAATGGTTACTGGTAGGG TCATAAATGGTGACAGAGAACTCAAAAGAACCATGCTTCCAAAAATAACCTCAGACTCCAAGTTGCGACCTTCTGATGCTCAGGAATTCAGATCTAAATC CTCTCCTGGCGTTGGAGTGAATAAATCAGATTGTTCAGTAGAGCCTACTAGTTCAGATACCAGCACAGCATTGAGGAATGAAATAGATAGTGGACCTTCT CCAAGAGACCGTATAGCTCATTTGGAAAAGAAAGCTTTGGCAAAATCAAGCAATAAGTTAAATGTTCACGAGGAGAATCTAGCAGTCAGTCCTAGTACAG TGATAAAGACAAAAGTGTCACGGGCACCACGAACTGGGTCTATCATGCAACTAGACTCTTCACTTAAGGCACACCCTACATCCACCTCTCTCCAAGGTGC GGAACAGACTTCAAGTTCAAATAGAGTGCAAGTTCCAGGTATGGCAAGTAACCATAAACGGCAAATGTCCGCAGGTTCGTCTTCACATGCAATGGCTCAG TGGGTTGGCCAGAGACCTCATAAAAACTCTCGGACGCGGAGAGCAAATATAATCACTCCTGTATCAAGTAATGCTGAAGCTCAGATATCTTCTCAAGGTT TTCTGCCTTCTGACTTTAGTGGTAGGACATCTTCCATTACCACCAATGGATCACTAGCTGCAAGCAGCTTGGATAATGGCACTCCAAAAACTAAAAGGGA GATAGAGAATTCTCCTTCACCTTTTGGATTTTCTGAAAGTGAAGAATCAGGGGCTGGAGAAAATAAGATTAAAGATAAAAGAAGAGATAGTTTTGAGGCT CCTCCAACTATTTCACACAAAGGTGGCTCTTTTCCAATTCCATCTAAGAAGAACAAGTTACCGATTAACGAAGTTGGAGAAGGGGTGCGTAGGCAAGGAC GAACTGGCAGGAGTCCATCTTTAGCTAGACCAGGGGTTAATTCTGGGAGAGAGAAGTTAGAGAACCAACCGACAATGAAACCAATTCCAATTGTGAAGCC TCCTTCTGATAAGAATAAAAACAAAACTGGTCGTCCACCTTCCAAAAAATTAAAAGATCGAAAAGCTGTGTCCCGAACAGGCCCAGTGCTGAATGGAAAT TCTTCAGATTACACAGGTGAATCTGATGATGACGGCGAGGAACTATTTGCTGCTGCTAATTCTGCTCGGAATGCTTGCCACCTGGCCTGCTCTGGCCCAT TTTGGAAAAAGATGGAACCTATATTTGCTTCTGTCAGCTCAGAGGACACTTCATATTTGAAGGATCAGCTGAGTTTTGCAGGGGAGCTAGATGAGAACTT GTCTCAGGTGCTTGGCACTGAGTACAATGTCTTGGGTGTTGTGATGCAAAAGGAGTCTCCTAATCTCTCCAGTGAAAAGCTAGCGAATGGGTGTAAACAG GACTCAACCAACTTGGCCACTTCTCTAAGTGCTCCACTATACCAAAGAGTTCTTTCAGCTCTGATTGAAGAAGATGAATATGAAGAATTTAACGTACACT GTGAAGGGAAAAATATGCATCCTCACTACGCTAGTGATGATTCTCATTGTGGTTCCTGTAACCTGATCGACATTGAACCCAGAGATAGGGATAGAACAGA ATCCGAAGTTGAATCTACAGTGAACTTCCAGACCCAACGGAGCTATTTCCTGGATGGATTTTCATGCAATAAAGGTATTGCATCTAACACCGTCAGGAAT CCGGTCATGTCTAGTTCTTTACTCAGCAATGGTCAATGGAAAGGCCGCGATGACGAGGTATCACATTCGGATCTAACACATGGCAACGACATTTCTTCAA ACGACATGGGTTTGCTGCATACGAGGGAATATGCTATGCCTGGGTTTTCTGCATCTGATCGGCAGTATCAACTTATGTGCCTTGATGATCGGCTGATGTT GGAGTTACAGAGCATTGGTATATGTCCAGAGAAACTGCTTCTTTTGCAGCCTGATCTTGCAGAGGGGGAAGAGATCATTAATCAAGACATTGTGGAACTT AAAGAAGGATTGCACGAACAGATTGGAGAAAAGAGAAGGAAGTTAGAGAAAATTGATAACGCTGTCTCGAGGGAAAAAGATTTCGGACGAAGGAGCATCG AGCAAACTGCAATGGACCAACTCGTTGAAATTGCCTACAGGAAACGACTGGCATGCCGTGGAAACAGCACGTCAAAGGGCTCGGTTCGCAAGGTTCCTCG ACAAGTTGCGTTGAATTTCATCAGGCGCACGCTCGGCAGATGCCGCAAGTTCGAAGACAGTGGCATCAGTTGCTTCAGTGAGCCAGCTTTACAGGAGGTT CTCTTCTCAAGACCTTCGTCCAACAACAATGATGCCAAATCTGCCGATTGCGTCGGCTCGGGAACTGCTAGTAACACACTGAATGATGTTGGCGACGCCA AAGCATCAGGAGCTGCTTCGAGCCCGTTTGAGAGATACGACTCCCCCTGCAACAACTTCGAACGAGGTAAGAAGCGGGAAGTCCTTATTAATGATCTTGT CGGTAGAGATCAAAACAAGGGTAAACTTAGAAGTCTTTCCTCCTCAGGAGTCAACAACAACGGATTCAAACCCGAGCGCAAGGCGAAAGCAAAGCCGAAG CAGAAGACGGCCGCGGCAGCTCCTCCTCCACCGCTTCCTCGAGCATCGAGCCACCACCCGACACAGCCCCATTCCCAGAAGAGGACCAATGGGCCTGTGA ATATGGCCCATGATGTGTCTAGAGAAGCGGCAGCAGCTGACGAGCCCATGGACTTGCAGCTGGATGACGAGCTGGGAGAGCACCAGGATCTCGGTTCGTT GTTTAACATGATCGAAGATGACGATGGCTTGCAAGATGATTACTCGGTCGGTTTGCAGATACCCATGGATGACCTCTCGGAATTGATTCTGATGTAG
AA sequence Show only first row Show all	>Lus10020607 pacid=23172376 polypeptide=Lus10020607 locus=Lus10020607.g ID=Lus10020607.BGIv1.0 annot-version=v1.0 MFGSGSSLSRGNATSPLDMPPLTECLPLEPITLGGHKFTRSGEIRRALGFGSASEDLSFGLAHPKPSPAVATEELKVFKESVQDTNRKARDRSKLLKDSI IKLEKYREVLTSKKRQRSDFSVGERPNGSNLAKMGSQIHRSPHDGMPQRLEDRAKSIGLNKRVRTSVADVRADIRSSPSPRQQMVMEKGADVLLDVGGGG ARFEEKIRRLPAGGEGWDTKNKKKRSVGMVTGRVINGDRELKRTMLPKITSDSKLRPSDAQEFRSKSSPGVGVNKSDCSVEPTSSDTSTALRNEIDSGPS PRDRIAHLEKKALAKSSNKLNVHEENLAVSPSTVIKTKVSRAPRTGSIMQLDSSLKAHPTSTSLQGAEQTSSSNRVQVPGMASNHKRQMSAGSSSHAMAQ WVGQRPHKNSRTRRANIITPVSSNAEAQISSQGFLPSDFSGRTSSITTNGSLAASSLDNGTPKTKREIENSPSPFGFSESEESGAGENKIKDKRRDSFEA PPTISHKGGSFPIPSKKNKLPINEVGEGVRRQGRTGRSPSLARPGVNSGREKLENQPTMKPIPIVKPPSDKNKNKTGRPPSKKLKDRKAVSRTGPVLNGN SSDYTGESDDDGEELFAAANSARNACHLACSGPFWKKMEPIFASVSSEDTSYLKDQLSFAGELDENLSQVLGTEYNVLGVVMQKESPNLSSEKLANGCKQ DSTNLATSLSAPLYQRVLSALIEEDEYEEFNVHCEGKNMHPHYASDDSHCGSCNLIDIEPRDRDRTESEVESTVNFQTQRSYFLDGFSCNKGIASNTVRN PVMSSSLLSNGQWKGRDDEVSHSDLTHGNDISSNDMGLLHTREYAMPGFSASDRQYQLMCLDDRLMLELQSIGICPEKLLLLQPDLAEGEEIINQDIVEL KEGLHEQIGEKRRKLEKIDNAVSREKDFGRRSIEQTAMDQLVEIAYRKRLACRGNSTSKGSVRKVPRQVALNFIRRTLGRCRKFEDSGISCFSEPALQEV LFSRPSSNNNDAKSADCVGSGTASNTLNDVGDAKASGAASSPFERYDSPCNNFERGKKREVLINDLVGRDQNKGKLRSLSSSGVNNNGFKPERKAKAKPK QKTAAAAPPPPLPRASSHHPTQPHSQKRTNGPVNMAHDVSREAAAADEPMDLQLDDELGEHQDLGSLFNMIEDDDGLQDDYSVGLQIPMDDLSELILM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22450			unknown protein		Lus10020607 [exp]	0	1
AT3G10550		MTM1, AtMTM1	Arabidopsis thaliana myotubula...		Lus10037915 [exp]	1.0	0.9087
AT2G39340		AtSAC3A	yeast Sac3 homolog A, SAC3/GAN...		Lus10030305 [exp]	2.0	0.8898
AT1G23230			unknown protein		Lus10016701 [exp]	4.9	0.8805
AT2G39260			binding;RNA binding (.1)		Lus10040364 [exp]	7.9	0.8394
AT1G17760		CSTF77, ATCSTF7...	ARABIDOPSIS THALIANA CLEAVAGE ...		Lus10028994 [exp]	8.9	0.8119
AT1G03370			C2 calcium/lipid-binding and G...		Lus10001915 [exp]	10.5	0.8365
AT5G03450			Transducin/WD40 repeat-like su...		Lus10026534 [exp]	11.2	0.8106
AT5G25060			RNA recognition motif (RRM)-co...		Lus10026892 [exp]	13.2	0.8068
AT4G15475			F-box/RNI-like superfamily pro...		Lus10012764 [exp]	13.3	0.8339
AT3G06620			PAS domain-containing protein ...		Lus10037772 [exp]	14.1	0.8581

Compare expression of checked genes

Lus10020607 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.