Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G67190 578 / 0 F-box/RNI-like superfamily protein (.1.2) AT1G10780 49 / 5e-06 F-box/RNI-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004875 [exp] 783 / 0 AT1G67190 619 / 0.0 F-box/RNI-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G164200 [exp] 661 / 0 AT1G67190 613 / 0.0 F-box/RNI-like superfamily protein (.1.2) Potri.004G203300 [exp] 646 / 0 AT1G67190 654 / 0.0 F-box/RNI-like superfamily protein (.1.2)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020611 pacid=23172367 polypeptide=Lus10020611 locus=Lus10020611.g ID=Lus10020611.BGIv1.0 annot-version=v1.0 ATGGAGAATCTTCCTGTGGAAGTGATTGGGAACATCTTGTCGAGACTAGGAGGTGCTAGGGATGTGATAATAGCTTCAGCAACATGTCGAAAGTGGCGAG AAGCTTACCGCAGCCATCTCCAGACGCTCTCATTCAACTCCAACGACTGGCCTCTCTACCATGATTTTTCAACCAGTAAGTTACAGATACTGATAACACA AACCATATTCCAAACCACCGGTTTGCAAGGATTGTCGATCTTAATGGACGATGTCGTAGAAGAGTTCTCGGCTTCAACTGTCATCGCTTGGCTGATGTAC ACTCGGGAGTCTCTCCGGAGACTCTACTACAACGTGCACACCACCCCGGGAGTCAACATTCTCGAGCTTTGTGGTAGACAAAAGCTCGAAACTTTATTCC TGTCTCATAACTCGATCACGGGGGTGGAACCGAATTTCCAGAGATTCCCTTGCTTGAAATCGCTGGCTTTGAGCTACGTTACCATCTCGGCTCTGGACCT TAACCTCTTGCTCGCTGCGTGCCCTAAAGTCGAGATGCTGGAGCTTGTGAATCCCGAGATTGCAATGTCGGATGGCCTGGTTACTATCGAGTTGAGTAGT CATACATTGAAGAGTGTCTATGTCGAAGCGAGTAGCTTGGATAAGTTCATATTGGAGGCCGATAGTATCGAGTGTTTGCACTTGAAAGATTGCGCTTTTG AGCTTTTCGAGCTAGCAGGTAAAGGGACCTTGAAGCATTTCAAGATTGATGATGTTAGTCTTGTCCATCTCGATATTGGCGACATTGTAGAGAATCTTGA AGTCGTTGATGTGAGCAACTTCACGATCATCTGGCCGAAATTCTACCAGATGATTTCCAAGTCGTCGAAACTGAAAAGACTCAGGCTTTGGGATGTGGTC TTTTACGAGGAGGAAGAGATTGTGGATTTGGAGACTATTGCGACTTGCTTTCCAAATCTTAGTCTTTTGTCGATGAGCTATGACTTGAAAGAGACCATGC TTCAGTATGGTTTGCAAGGGGATTCGAAACTGGAGAATGTAGTTGTGTTGGAACTCGGTTGGAACGTGATTAATGAACTCTTCCCGCATTGGGTTGAAGG GTTGCTGAAACGTTGCCCGAACGTAAAGAAGTTGATTCTCCATGGAGTCGTTTCGGATGTCAAGGGCCATGAGGAGTGTCAGATGCTAGCTAACTTCACC TCATATATGGTCAAGCTCATGAGGAGATATGTTCATATCGACGTTCAGTTTGAGTATGCATAG
AA sequence Show only first row Show all	>Lus10020611 pacid=23172367 polypeptide=Lus10020611 locus=Lus10020611.g ID=Lus10020611.BGIv1.0 annot-version=v1.0 MENLPVEVIGNILSRLGGARDVIIASATCRKWREAYRSHLQTLSFNSNDWPLYHDFSTSKLQILITQTIFQTTGLQGLSILMDDVVEEFSASTVIAWLMY TRESLRRLYYNVHTTPGVNILELCGRQKLETLFLSHNSITGVEPNFQRFPCLKSLALSYVTISALDLNLLLAACPKVEMLELVNPEIAMSDGLVTIELSS HTLKSVYVEASSLDKFILEADSIECLHLKDCAFELFELAGKGTLKHFKIDDVSLVHLDIGDIVENLEVVDVSNFTIIWPKFYQMISKSSKLKRLRLWDVV FYEEEEIVDLETIATCFPNLSLLSMSYDLKETMLQYGLQGDSKLENVVVLELGWNVINELFPHWVEGLLKRCPNVKKLILHGVVSDVKGHEECQMLANFT SYMVKLMRRYVHIDVQFEYA

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G67190			F-box/RNI-like superfamily pro...		Lus10020611 [exp]	0	1
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10012506 [exp]	3.6	0.8493
AT5G28150			Plant protein of unknown funct...		Lus10001787 [exp]	4.2	0.8716
AT5G41140			Myosin heavy chain-related pro...		Lus10008012 [exp]	4.5	0.8633
AT3G61260			Remorin family protein (.1)		Lus10014785 [exp]	6.2	0.8675
AT1G10740			alpha/beta-Hydrolases superfam...		Lus10030586 [exp]	6.2	0.8412
AT3G44200		IBO1, ATNEK6	"NIMA \(never in mitosis, gene...		Lus10013338 [exp]	7.6	0.8350
AT2G46780			RNA-binding (RRM/RBD/RNP motif...		Lus10002684 [exp]	13.6	0.8308
AT2G20760			Clathrin light chain protein (...		Lus10018582 [exp]	17.1	0.8768
AT2G31680		AtRABA5d	RAB GTPase homolog A5D (.1)		Lus10026731 [exp]	17.8	0.8264
AT3G27580		D6PKL3, ATPK7	D6 PROTEIN KINASE LIKE 3, Prot...		Lus10022272 [exp]	31.8	0.8383

Compare expression of checked genes

Lus10020611 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.