Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G08350 88 / 6e-21 Endomembrane protein 70 protein family (.1.2) AT2G01970 78 / 1e-17 Endomembrane protein 70 protein family (.1) AT1G14670 75 / 2e-16 Endomembrane protein 70 protein family (.1) AT5G37310 71 / 5e-15 Endomembrane protein 70 protein family (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10031308 [exp] 84 / 1e-19 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10026371 [exp] 84 / 2e-19 AT2G01970 912 / 0.0 Endomembrane protein 70 protein family (.1) Lus10042286 [exp] 84 / 2e-19 AT2G01970 1061 / 0.0 Endomembrane protein 70 protein family (.1) Lus10031876 [exp] 82 / 8e-19 AT2G01970 1059 / 0.0 Endomembrane protein 70 protein family (.1) Lus10004873 [exp] 0 / 1 AT1G08350 668 / 0.0 Endomembrane protein 70 protein family (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G203200 [exp] 107 / 1e-27 AT1G08350 671 / 0.0 Endomembrane protein 70 protein family (.1.2) Potri.004G075450 [exp] 82 / 4e-19 AT5G37310 953 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144181 [exp] 77 / 3e-17 AT5G37310 979 / 0.0 Endomembrane protein 70 protein family (.1) Potri.017G144241 [exp] 74 / 5e-16 AT5G37310 989 / 0.0 Endomembrane protein 70 protein family (.1) Potri.012G042300 [exp] 55 / 2e-09 AT1G14670 762 / 0.0 Endomembrane protein 70 protein family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF02990 [flax] [poplar] EMP70 Endomembrane protein 70
Representative CDS sequence Show only first row Show all	>Lus10020613 pacid=23172280 polypeptide=Lus10020613 locus=Lus10020613.g ID=Lus10020613.BGIv1.0 annot-version=v1.0 ATGTTCGGAGGTTTCGAAGGGCGGTTATCAATGATTACTATTACAAGATGTACTATGGCGATCTCCCAGTGTGGGGGGTTTGTTGGGAAAGTTAAAGAAC AGAGTTGGCTGCTTGGAGGACATGATAAGAAGTTGAAGAAGTATTATTTGTTCAAGCATGTGATGTTTGATGTGGTCTATAGTGGCTATCGAGTGATGGA GATAAGTGCCATTTGCGATCCGGATAAAGCTGTGGACATAACTGAAGATGTCGAGATTGATGTTGTCGAGTTCACTTACTCGGTCTCGTGGAATGAAACG TCCTCGCATGTGTTGTCTCGGAGTCGGATGGATAGATACACCAGAGCGTCGGCGTTTACTGTGAACCGGAAGATCAATTGGTTCTCGTTTGTTAACTCGA TTGTTAGTCTGATGCTGTTGATGGGATAG
AA sequence Show only first row Show all	>Lus10020613 pacid=23172280 polypeptide=Lus10020613 locus=Lus10020613.g ID=Lus10020613.BGIv1.0 annot-version=v1.0 MFGGFEGRLSMITITRCTMAISQCGGFVGKVKEQSWLLGGHDKKLKKYYLFKHVMFDVVYSGYRVMEISAICDPDKAVDITEDVEIDVVEFTYSVSWNET SSHVLSRSRMDRYTRASAFTVNRKINWFSFVNSIVSLMLLMG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G08350			Endomembrane protein 70 protei...		Lus10020613 [exp]	0	1
AT2G47770		ATTSPO	TSPO(outer membrane tryptophan...		Lus10010281 [exp]	3.7	0.9193
AT5G20885			RING/U-box superfamily protein...		Lus10008235 [exp]	4.0	0.9183
AT2G45550		CYP76C4	"cytochrome P450, family 76, s...		Lus10008935 [exp]	6.8	0.9464
AT5G41761			unknown protein		Lus10000541 [exp]	8.4	0.8737
AT2G28085			SAUR-like auxin-responsive pro...		Lus10021435 [exp]	11.5	0.9366
AT2G38560		RDO2, TFIIS	REDUCED DORMANCY 2, transcript...		Lus10029016 [exp]	12.8	0.9276
AT5G15430			Plant calmodulin-binding prote...		Lus10021647 [exp]	17.2	0.8016
AT5G60330			unknown protein		Lus10018274 [exp]	18.7	0.9238
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016129 [exp]	18.9	0.8598
AT2G28085			SAUR-like auxin-responsive pro...		Lus10016130 [exp]	19.7	0.9115

Compare expression of checked genes

Lus10020613 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.