Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G52740 70 / 2e-16 unknown protein AT3G44450 63 / 9e-14 unknown protein
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004872 [exp] 120 / 3e-36 AT3G52740 102 / 6e-29 unknown protein Lus10014197 [exp] 69 / 2e-15 AT3G52740 87 / 2e-22 unknown protein Lus10017046 [exp] 64 / 2e-13 AT3G52740 94 / 6e-25 unknown protein Lus10021366 [exp] 63 / 3e-13 AT3G52740 91 / 1e-23 unknown protein Lus10022717 [exp] 61 / 1e-12 AT3G52740 76 / 3e-18 unknown protein
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202900 [exp] 77 / 4e-19 AT3G52740 100 / 1e-27 unknown protein Potri.009G163900 [exp] 72 / 2e-17 AT3G52740 101 / 7e-29 unknown protein Potri.009G164000 [exp] 71 / 1e-16 AT3G52740 95 / 2e-25 unknown protein Potri.004G203000 [exp] 70 / 3e-16 AT3G52740 90 / 1e-23 unknown protein
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020614 pacid=23172309 polypeptide=Lus10020614 locus=Lus10020614.g ID=Lus10020614.BGIv1.0 annot-version=v1.0 ATGGCGGAATCTCACCACGTTCACCAAGAAATCCCACCTCCACCACCCCGGCGGTTCCTTCTACTCTCTCAGAGACCAAACGGGTCGCCGCCGGAGCAGA GGACGGCGGTGGTGGCGGAGGAGGCGGGGCGGGAGAGGCTGAAGCGGCACAGGGAAGAGGTGGCGGGGAGAGTGGCGATTCCGGAGAACTGGGGGCAGGA GAATCTTCTGAGTGATTGGGTCGATTGTACTCCGTTTGACACGCTGTTGGCTCCGGCGGGTCTGTCGTCGGCCAGGGCTGCTCTGGCGGCGGAGGGACGG AGGCGGGGTGTCGGCGGTGGTGGTCAGAGATTGAGGATTCAGAGTAGGTGCTGCTGA
AA sequence Show only first row Show all	>Lus10020614 pacid=23172309 polypeptide=Lus10020614 locus=Lus10020614.g ID=Lus10020614.BGIv1.0 annot-version=v1.0 MAESHHVHQEIPPPPPRRFLLLSQRPNGSPPEQRTAVVAEEAGRERLKRHREEVAGRVAIPENWGQENLLSDWVDCTPFDTLLAPAGLSSARAALAAEGR RRGVGGGGQRLRIQSRCC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G52740			unknown protein		Lus10020614 [exp]	0	1
AT1G79510			Uncharacterized conserved prot...		Lus10001766 [exp]	1.4	0.9634
AT2G15020			unknown protein		Lus10013880 [exp]	2.0	0.9628
AT2G47490		ATNDT1	NAD+ transporter 1, ARABIDOPSI...		Lus10001463 [exp]	3.5	0.9344
AT1G22430			GroES-like zinc-binding dehydr...		Lus10004786 [exp]	4.5	0.9548
AT3G09280			unknown protein		Lus10018504 [exp]	4.9	0.9318
AT5G18470			Curculin-like (mannose-binding...		Lus10003099 [exp]	5.2	0.9560
AT2G04790			unknown protein		Lus10012354 [exp]	6.6	0.9092
AT4G09350		NdhT, CRRJ	NADH dehydrogenase-like comple...		Lus10029740 [exp]	7.1	0.9420
AT1G79510			Uncharacterized conserved prot...		Lus10009597 [exp]	8.8	0.9328
AT4G15440		CYP74B2, HPL1	hydroperoxide lyase 1 (.1)		Lus10015138 [exp]	13.1	0.9301

Compare expression of checked genes

Lus10020614 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.