Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27530 314 / 3e-108 PGY1 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) AT1G08360 313 / 1e-107 Ribosomal protein L1p/L10e family (.1) AT5G22440 310 / 9e-107 Ribosomal protein L1p/L10e family (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10026664 [exp] 351 / 1e-117 AT2G03510 537 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10004648 [exp] 348 / 1e-116 AT2G03510 541 / 0.0 SPFH/Band 7/PHB domain-containing membrane-associated protein family (.1) Lus10036911 [exp] 316 / 4e-103 AT2G03530 575 / 0.0 ARABIDOPSIS THALIANA UREIDE PERMEASE 2, ureide permease 2 (.1.2) Lus10004871 [exp] 0 / 1 AT2G27530 201 / 3e-92 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Lus10037074 [exp] 0 / 1 AT2G03590 575 / 0.0 ureide permease 1 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202832 [exp] 319 / 3e-110 AT2G27530 337 / 7e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.007G034800 [exp] 319 / 3e-110 AT2G27530 338 / 2e-119 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.007G035600 [exp] 318 / 6e-110 AT2G27530 339 / 9e-120 PIGGYBACK1, Ribosomal protein L1p/L10e family (.1.2) Potri.004G202766 [exp] 309 / 4e-106 AT1G08360 336 / 1e-118 Ribosomal protein L1p/L10e family (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00687 [flax] [poplar] Ribosomal_L1 Ribosomal protein L1p/L10e family
Representative CDS sequence Show only first row Show all	>Lus10020615 pacid=23172267 polypeptide=Lus10020615 locus=Lus10020615.g ID=Lus10020615.BGIv1.0 annot-version=v1.0 ATGAGTAAGCTGCAGAGTGAGACACTGAGAGAAGCCATCTCAGCCATCAAAGCCGGTGCTAACGAAAAGCCTCGCAAGTTCACCGAAACTGTCGAGCTGC AGATTGGGTTGAAGAACTATGACCCCCAGAAAGACAAGCGTTTCAGTGGCTCAGTTAAGTTGCCTCACATCCCTCGCCCCAAGATGAAGGTCTGCATGCT TGGAGATGCCCAGCATGTCGAAGAGGCGAATGCAATGGGACTGCAATCCATGGATGTGGAAAGCTTGAAAAAGCTGAACAAGAACAAGAAACTGGTTAAG AAGCTAGCAAAGTCTTACCATGCTTTCCTGGCTTCTGAGTCTGTTATCAAGCAGATTCCCCGTCTTCTAGGCCCCGGAAAGTTCCCGACTCTTGTGAGTC ATCAGGAATCCCTGGAGTCGAAGGTGAACGAGATCAAGGCAACCGTGAAATTCCAGCTGAAGAAGGTTCTGTGCATGGGAGTTGCGGTGGGAAACCTTGA TATGGACGAGAAGCAGATCTTCCAGAACGTGCAAATGAGCATCAACTTCCTTGTCTCCCTGCTGAAGAAGAATTGGCAGAACATTGTCGACGATGGAGTT CACACGGGAGGCGGCAATGGGAGATGGAAGAGAAGAGGAAGAGACGACGTTGGAGAAGCAACGGCGGCAGCGTTGGCGATGAAAACGAAGGGCCGCCAGC CACCCTCTCTTTCTTCCGCCAACCTCCCCCCTTTAGGGTTCTTCTCTGAATCTTCCTCACTTTCTCCGCCGTCCTTTCACAGCTTCACTCCGCCGGTAAA GCTCTCTCTTTCCCTCTCTGTTTATCCGTTCTGGGTTTGGTTTGTATTCCAGTATGTGGTTTTTGTTGAGTTTCCGTGGTTGGTGAGGGTTTATGTTGGG AGAAATTTTGAATCTGTGAAGGGTTTCTGGGTTTTGTTTGAAAGTTTGAATCTTTTTATGGTGTTTTGTGTTTGTGCTCGTTGA
AA sequence Show only first row Show all	>Lus10020615 pacid=23172267 polypeptide=Lus10020615 locus=Lus10020615.g ID=Lus10020615.BGIv1.0 annot-version=v1.0 MSKLQSETLREAISAIKAGANEKPRKFTETVELQIGLKNYDPQKDKRFSGSVKLPHIPRPKMKVCMLGDAQHVEEANAMGLQSMDVESLKKLNKNKKLVK KLAKSYHAFLASESVIKQIPRLLGPGKFPTLVSHQESLESKVNEIKATVKFQLKKVLCMGVAVGNLDMDEKQIFQNVQMSINFLVSLLKKNWQNIVDDGV HTGGGNGRWKRRGRDDVGEATAAALAMKTKGRQPPSLSSANLPPLGFFSESSSLSPPSFHSFTPPVKLSLSLSVYPFWVWFVFQYVVFVEFPWLVRVYVG RNFESVKGFWVLFESLNLFMVFCVCAR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27530		PGY1	PIGGYBACK1, Ribosomal protein ...		Lus10020615 [exp]	0	1
AT2G42740		RPL16A	ribosomal protein large subuni...		Lus10020715 [exp]	3.5	0.9648
AT4G16720			Ribosomal protein L23/L15e fam...		Lus10004743 [exp]	7.9	0.9565
AT3G20000		TOM40	translocase of the outer mitoc...		Lus10017368 [exp]	9.2	0.9529
AT2G19480		NFA2, NFA02, NA...	NUCLEOSOME/CHROMATIN ASSEMBLY ...		Lus10011956 [exp]	11.5	0.8967
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10010763 [exp]	12.2	0.9510
AT3G62870			Ribosomal protein L7Ae/L30e/S1...		Lus10015841 [exp]	14.1	0.9503
AT1G74050			Ribosomal protein L6 family pr...		Lus10039083 [exp]	15.5	0.9524
AT3G55280		RPL23A2, RPL23A...	RIBOSOMAL PROTEIN L23A2, ribos...		Lus10005441 [exp]	17.0	0.9443
AT5G52470		ATFIB1, ATFBR1,...	SKP1/ASK1-INTERACTING PROTEIN,...		Lus10039260 [exp]	17.2	0.9451
AT3G53740			Ribosomal protein L36e family ...		Lus10024402 [exp]	18.3	0.9473

Compare expression of checked genes

Lus10020615 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.