Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27510 172 / 8e-56 ATFD3 ferredoxin 3 (.1) AT1G60950 144 / 9e-45 FED A, ATFD2, FEDA FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT1G10960 135 / 2e-41 ATFD1 ferredoxin 1 (.1) AT5G10000 124 / 7e-37 ATFD4 ferredoxin 4 (.1) AT4G14890 93 / 8e-25 FdC2 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) AT1G32550 72 / 2e-16 FdC1 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004870 [exp] 295 / 2e-104 AT2G27510 165 / 5e-53 ferredoxin 3 (.1) Lus10034144 [exp] 170 / 8e-55 AT2G27510 179 / 1e-58 ferredoxin 3 (.1) Lus10043430 [exp] 168 / 3e-54 AT2G27510 179 / 3e-58 ferredoxin 3 (.1) Lus10015462 [exp] 135 / 4e-41 AT1G60950 182 / 8e-60 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10001369 [exp] 134 / 6e-41 AT1G60950 186 / 1e-61 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10006116 [exp] 88 / 8e-23 AT4G14890 186 / 1e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10010557 [exp] 90 / 1e-22 AT4G14890 188 / 5e-61 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Lus10000483 [exp] 70 / 2e-15 AT1G32550 245 / 7e-84 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2) Lus10004576 [exp] 69 / 5e-15 AT1G32550 248 / 6e-85 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202500 [exp] 194 / 3e-64 AT2G27510 164 / 3e-52 ferredoxin 3 (.1) Potri.009G163800 [exp] 189 / 1e-62 AT2G27510 167 / 7e-54 ferredoxin 3 (.1) Potri.008G020100 [exp] 167 / 6e-54 AT2G27510 180 / 5e-59 ferredoxin 3 (.1) Potri.010G239100 [exp] 166 / 2e-53 AT2G27510 175 / 7e-57 ferredoxin 3 (.1) Potri.004G218400 [exp] 149 / 5e-47 AT1G60950 194 / 9e-65 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G015200 [exp] 144 / 4e-45 AT1G60950 176 / 2e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.001G470700 [exp] 138 / 1e-42 AT1G60950 174 / 7e-57 FERREDOXIN 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.010G087300 [exp] 90 / 1e-23 AT4G14890 189 / 7e-63 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.008G153200 [exp] 89 / 3e-23 AT4G14890 193 / 2e-64 ferredoxin C 2, 2Fe-2S ferredoxin-like superfamily protein (.1) Potri.003G090400 [exp] 68 / 1e-14 AT1G32550 257 / 3e-88 ferredoxin C 1, 2Fe-2S ferredoxin-like superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0486 [flax] [poplar] Fer2 PF00111 [flax] [poplar] Fer2 2Fe-2S iron-sulfur cluster binding domain
Representative CDS sequence Show only first row Show all	>Lus10020616 pacid=23172327 polypeptide=Lus10020616 locus=Lus10020616.g ID=Lus10020616.BGIv1.0 annot-version=v1.0 ATGGCAACCGCAACCGCTCTCTCCCAAACCGTTATCGCATCCGGGATCGAAAAAAGATTCACGAGCTCAGTTTTCAACCCGGTGAACACCATTGTGCCAG CGAGGAGCACTATCTCGAAGCCGTTGGGGTTAAAATTCAGCCGAAACTCGACAGTGTGCAATGCGGTTTACAAAGTGAAGCTCGTGGGACCGGACGGTGA GAACACGGAGTTTGAATGTGCGGACGATACTTACATTCTCGACGCGGCAGAGGAGGCCGGAGCGGATCTGCCTTACTCGTGCAGGGCCGGTGCTTGCTGC ACTTGTGCCGGGAAACTGGTTTCGGGATCGGTTGACCAGTCGGATGGGTCATTCTTGGACGAGAATCAGATGAAGGACGGGTATCTCCTCACTTGTGTCT CGTACCCGACTTCCGACTGTGAGATCCACACTCACAAGGAGGAAGAGCTCATGTAA
AA sequence Show only first row Show all	>Lus10020616 pacid=23172327 polypeptide=Lus10020616 locus=Lus10020616.g ID=Lus10020616.BGIv1.0 annot-version=v1.0 MATATALSQTVIASGIEKRFTSSVFNPVNTIVPARSTISKPLGLKFSRNSTVCNAVYKVKLVGPDGENTEFECADDTYILDAAEEAGADLPYSCRAGACC TCAGKLVSGSVDQSDGSFLDENQMKDGYLLTCVSYPTSDCEIHTHKEEELM

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27510		ATFD3	ferredoxin 3 (.1)		Lus10020616 [exp]	0	1
AT1G15530			Concanavalin A-like lectin pro...		Lus10019879 [exp]	1.0	0.9780
AT1G07160			Protein phosphatase 2C family ...		Lus10041072 [exp]	5.7	0.9662
AT3G21630		LYSMRLK1, CERK1	LYSM DOMAIN RECEPTOR-LIKE KINA...		Lus10030022 [exp]	5.7	0.9679
AT1G03910			unknown protein		Lus10021530 [exp]	5.7	0.9593
AT2G18670			RING/U-box superfamily protein...		Lus10015506 [exp]	5.8	0.9706
AT4G05390		ATRFNR1	root FNR 1 (.1.2)		Lus10023266 [exp]	9.5	0.9610
AT5G53560		B5#2, ATB5-A, A...	ARABIDOPSIS CYTOCHROME B5 ISOF...		Lus10008838 [exp]	9.5	0.9542
AT1G15170			MATE efflux family protein (.1...		Lus10028540 [exp]	12.0	0.9638
AT1G11300			protein serine/threonine kinas...		Lus10018516 [exp]	12.3	0.9237
AT1G11300			protein serine/threonine kinas...		Lus10039731 [exp]	13.2	0.9477

Compare expression of checked genes

Lus10020616 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.