Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27500 495 / 2e-175 Glycosyl hydrolase superfamily protein (.1.2.3) AT1G32860 425 / 4e-147 Glycosyl hydrolase superfamily protein (.1) AT5G42100 387 / 5e-132 ATBG_PPAP, ATBG_PAP ARABIDOPSIS THALIANA BETA-1,3-GLUCANASE_PUTATIVE, beta-1,3-glucanase_putative (.1.2) AT4G18340 372 / 1e-126 Glycosyl hydrolase superfamily protein (.1) AT1G30080 365 / 6e-124 Glycosyl hydrolase superfamily protein (.1) AT3G15800 334 / 7e-112 Glycosyl hydrolase superfamily protein (.1) AT4G26830 332 / 2e-110 O-Glycosyl hydrolases family 17 protein (.1) AT2G26600 324 / 6e-108 Glycosyl hydrolase superfamily protein (.1.2) AT2G05790 325 / 3e-107 O-Glycosyl hydrolases family 17 protein (.1) AT5G55180 320 / 1e-105 O-Glycosyl hydrolases family 17 protein (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004869 [exp] 720 / 0 AT2G27500 491 / 5e-174 Glycosyl hydrolase superfamily protein (.1.2.3) Lus10008277 [exp] 417 / 4e-144 AT1G32860 483 / 6e-170 Glycosyl hydrolase superfamily protein (.1) Lus10033244 [exp] 411 / 1e-141 AT1G32860 483 / 5e-170 Glycosyl hydrolase superfamily protein (.1) Lus10001660 [exp] 399 / 7e-138 AT1G32860 462 / 8e-163 Glycosyl hydrolase superfamily protein (.1) Lus10017344 [exp] 400 / 9e-138 AT1G32860 459 / 5e-161 Glycosyl hydrolase superfamily protein (.1) Lus10028122 [exp] 363 / 3e-123 AT4G18340 513 / 0.0 Glycosyl hydrolase superfamily protein (.1) Lus10038501 [exp] 357 / 1e-121 AT4G18340 484 / 6e-172 Glycosyl hydrolase superfamily protein (.1) Lus10023309 [exp] 354 / 1e-119 AT4G18340 483 / 2e-170 Glycosyl hydrolase superfamily protein (.1) Lus10042825 [exp] 342 / 1e-115 AT4G18340 479 / 1e-170 Glycosyl hydrolase superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G202400 [exp] 515 / 0 AT2G27500 540 / 0.0 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.009G163700 [exp] 512 / 0 AT2G27500 499 / 1e-177 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.004G097400 [exp] 469 / 3e-165 AT2G27500 462 / 3e-163 Glycosyl hydrolase superfamily protein (.1.2.3) Potri.011G152400 [exp] 440 / 4e-153 AT1G32860 502 / 8e-178 Glycosyl hydrolase superfamily protein (.1) Potri.001G449100 [exp] 434 / 1e-150 AT1G32860 483 / 3e-170 Glycosyl hydrolase superfamily protein (.1) Potri.011G084900 [exp] 366 / 2e-124 AT1G30080 538 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.004G132700 [exp] 360 / 4e-122 AT1G30080 525 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.003G032600 [exp] 346 / 9e-117 AT3G15800 524 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.001G192200 [exp] 331 / 5e-110 AT3G15800 514 / 0.0 Glycosyl hydrolase superfamily protein (.1) Potri.006G067500 [exp] 328 / 8e-109 AT2G26600 561 / 0.0 Glycosyl hydrolase superfamily protein (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0058 [flax] [poplar] Glyco_hydro_tim PF00332 [flax] [poplar] Glyco_hydro_17 Glycosyl hydrolases family 17
Representative CDS sequence Show only first row Show all	>Lus10020618 pacid=23172331 polypeptide=Lus10020618 locus=Lus10020618.g ID=Lus10020618.BGIv1.0 annot-version=v1.0 ATGGCTTCCTCTGTTTCCAGACTTCTTCCCTTATTCTTCCTGATGCTTCTTTCAGGTTCGTTCAAAATTGGAACTTGGGGGAAAACCCTTTTCAGTTCTT GTCAATTGTTGGACTACAGTTTTCTCTGTGTTTTTTATCAATTGTTTTTCTTAGGGGCAATTCATCGAACAGATGGTGGGGGAGTGGGGATAAACTACGG CCAGATAGCCAACAACCTCCCATCGGTATCCAGAGTCGCGACTCTCCTCCAATCGCTCAATATAAGCAGGGTGAAGCTCTATGATGCTGATCCGAACGTC CTGAAAGCATTCGCCAACACGAATGTCGAGTTCATCATCGGACTAGGGAACGAGTTTCTCCAGGAAGTCAAAGATCCAGCCAAAGCTCAGAGCTGGATTG AGCAGCATGTCAAGCCTTACCTTCCACAGACGAAAATCACATCCATCTTAGTTGGAAACGAGGTATTCATGAGTAACAACACTCAGCTCGAGTACAATCT CCTCCCAGCAATGCAGACTGTGTACAAATCTCTGGTTAGCATGGGGCTAGACAAGCAAGTGACTGTCACAACTGCACATTCTCTTAATATATTAGCGAAT TCGTATCCCCCTTCTTCGGGGAGTTTCAGGCCTGATATCGCTGAGCTGATTAAGCCGTTGTTGGATTTCCACGCCCAGACTGATTCACCCTTTCTTATCA ATGTGTATCCTTTCTTTGCTTACAAGGGTAGTCCTGGTCAGGTGTCTTTGGATTATGCTCTTTTCCAGCCTAACCAAGGTATGACCGATCCGGCCACGAA TTTGAAGTACGACAATATGTTGTATGCTCAGCTTGATGCTGTTTACTCGGCGATGAAGGCGATGGGGCATACCGATATCGAGGTTAGGATTTCGGAGACT GGCTGGCCTTCGAAAGGTGACTCTGATGAAGCTGGAGCTACGCCACAGAATGCAGGGTTGTATAATGGTAATCTGTTGAAGAGAGTGATGGATAAAGAAA GCACGCCGGGGAAACCTTCTGTGCCGATCGATGTCCATGTTTTCGCGCTGTTTAACGAGAATTTGAAGCCTGGTCCGGCCTCAGAGAGGAACTATGGTCT CTTCTATCCTGATGGTTCGCCGGTTTATAACATTGGCAGTGTCATGCGTGATGGACAGCAACGTAGTTACCTTCCTGATATGACTTATAGTTCTTCACCG AAGATGAATAGACTGAACAGTCTTTTTCTAGCTACATCATCAATGGCCCCTCCACATATGGAAGATGATAAGGTTGACGGATAA
AA sequence Show only first row Show all	>Lus10020618 pacid=23172331 polypeptide=Lus10020618 locus=Lus10020618.g ID=Lus10020618.BGIv1.0 annot-version=v1.0 MASSVSRLLPLFFLMLLSGSFKIGTWGKTLFSSCQLLDYSFLCVFYQLFFLGAIHRTDGGGVGINYGQIANNLPSVSRVATLLQSLNISRVKLYDADPNV LKAFANTNVEFIIGLGNEFLQEVKDPAKAQSWIEQHVKPYLPQTKITSILVGNEVFMSNNTQLEYNLLPAMQTVYKSLVSMGLDKQVTVTTAHSLNILAN SYPPSSGSFRPDIAELIKPLLDFHAQTDSPFLINVYPFFAYKGSPGQVSLDYALFQPNQGMTDPATNLKYDNMLYAQLDAVYSAMKAMGHTDIEVRISET GWPSKGDSDEAGATPQNAGLYNGNLLKRVMDKESTPGKPSVPIDVHVFALFNENLKPGPASERNYGLFYPDGSPVYNIGSVMRDGQQRSYLPDMTYSSSP KMNRLNSLFLATSSMAPPHMEDDKVDG

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27500			Glycosyl hydrolase superfamily...		Lus10020618 [exp]	0	1
AT3G04590	AT-hook		AT hook motif DNA-binding fami...		Lus10006572 [exp]	3.7	0.7795
AT2G27500			Glycosyl hydrolase superfamily...		Lus10004869 [exp]	5.1	0.7757
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011859 [exp]	6.0	0.7261
AT5G15240			Transmembrane amino acid trans...		Lus10012824 [exp]	8.7	0.7597
AT3G27010	TCP	ATTCP20, PCF1, ...	ARABIDOPSIS THALIANA TEOSINTE ...		Lus10015760 [exp]	8.9	0.7615
AT2G32810		BGAL9	beta-galactosidase 9, beta gal...		Lus10016655 [exp]	11.9	0.7620
AT2G01818			PLATZ transcription factor fam...		Lus10003680 [exp]	15.9	0.7425
AT1G71930	NAC	VND7, ANAC030	Arabidopsis NAC domain contain...		Lus10017915 [exp]	17.1	0.6486
AT5G58430		ATEXO70B1	exocyst subunit exo70 family p...		Lus10011860 [exp]	18.3	0.6837
AT2G35710			Nucleotide-diphospho-sugar tra...		Lus10008518 [exp]	19.3	0.7241

Compare expression of checked genes

Lus10020618 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.