Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16390 93 / 8e-22 CAC1-A, BCCP-1, CAC1A, BCCP1, CAC1 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) AT5G15530 91 / 4e-21 BCCP2, CAC1-B biotin carboxyl carrier protein 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004868 [exp] 347 / 3e-120 AT5G16390 212 / 2e-67 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.017G092500 [exp] 117 / 4e-31 AT5G16390 191 / 1e-59 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2) Potri.004G119000 [exp] 112 / 2e-29 AT5G15530 173 / 7e-53 biotin carboxyl carrier protein 2 (.1) Potri.019G054400 [exp] 96 / 1e-22 AT5G16390 117 / 5e-31 BIOTIN CARBOXYL-CARRIER PROTEIN 1, BIOTIN CARBOXYL CARRIER PROTEIN, chloroplastic acetylcoenzyme A carboxylase 1 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0105 [flax] [poplar] Hybrid PF00364 [flax] [poplar] Biotin_lipoyl Biotin-requiring enzyme
Representative CDS sequence Show only first row Show all	>Lus10020619 pacid=23172390 polypeptide=Lus10020619 locus=Lus10020619.g ID=Lus10020619.BGIv1.0 annot-version=v1.0 ATGGCGTCCTCCTCCATCTCCGTTCCTTGCCCCAAAACCACTGCTGCTCTCGTCGTTCCTTCATCGCAACCTCTTGTTCAATCCCGCCATGGACGGCTCT CCTTCCCTCTTGGATCCACATTCTCTGGTCTTCAGTGGCCTAGCAGGAAAGGATCTTCGATCTCGATGGTACGAGCACAGCTGAACGAGGTGGCTGCCAA GGAGTCTGTGAATCATTCAGCTTCAGCGGACTCCTCAACATCTACCGATGCACCATCGGACGAGAAAACCGACGCTCCAAAGGGAAGAAGAGTGCCGGAT TCAGCATCACTCTCTGAGTTCATGGAACAAGTGTCGGACCTCGTCAAGCTAGTGGATTCAAGAGACATAATGGAACTGAAACTGAAGCAATTGGACTGTG AAATCGAGATCAGGAAAAAAGAGGCTCTTCCTCAGCCGCCAACTCCTCCTCCCGTCATGATGATGCAATCTCCGTATCAACAGCACGCCATCGTTGAGCC ACACTCCTCAAAAACACCCCCCCCCCCCCCCCCCCCCCCCCCACCACAGGCAGCATCGGCTGCTCCTGCTGCTGCGGCCAAGGCTCCGACTTTGGCCTTG CCTCCTCCTGCAAAGGCTGCCTCGGCTCATCCACCAATGGGTTGTCCAATGGCTGGCACCTTCTACCGGTGTCCTGCCCCGGACGAACCCCCGTTTGTGA AGGTTGGAGATAAGGTGCAGAAAGGTCAGGTTGTTTGCATCATCGAAGCCATGAAGCTGATGAACGAAATCGAGGCTGATAAATCAGGAACCATAGTTGA AGTTGTAGCCGAAGATGGTAAACCAGTCACCATTGGCACGGTAATCGCACTTTACCCTCTCTCTCAATCTGTTGCATGA
AA sequence Show only first row Show all	>Lus10020619 pacid=23172390 polypeptide=Lus10020619 locus=Lus10020619.g ID=Lus10020619.BGIv1.0 annot-version=v1.0 MASSSISVPCPKTTAALVVPSSQPLVQSRHGRLSFPLGSTFSGLQWPSRKGSSISMVRAQLNEVAAKESVNHSASADSSTSTDAPSDEKTDAPKGRRVPD SASLSEFMEQVSDLVKLVDSRDIMELKLKQLDCEIEIRKKEALPQPPTPPPVMMMQSPYQQHAIVEPHSSKTPPPPPPPPPPQAASAAPAAAAKAPTLAL PPPAKAASAHPPMGCPMAGTFYRCPAPDEPPFVKVGDKVQKGQVVCIIEAMKLMNEIEADKSGTIVEVVAEDGKPVTIGTVIALYPLSQSVA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16390		CAC1-A, BCCP-1,...	BIOTIN CARBOXYL-CARRIER PROTEI...		Lus10020619 [exp]	0	1
AT4G22900			Protein of unknown function (D...		Lus10001191 [exp]	2.0	0.9223
AT2G45470		AGP8, FLA8	FASCICLIN-like arabinogalactan...		Lus10009235 [exp]	2.0	0.9260
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031337 [exp]	3.0	0.9221
AT5G10160			Thioesterase superfamily prote...		Lus10020419 [exp]	3.7	0.8820
AT3G18600			P-loop containing nucleoside t...		Lus10009616 [exp]	3.9	0.9139
AT4G18760		AtRLP51	receptor like protein 51 (.1)		Lus10005430 [exp]	4.0	0.8991
AT1G34430		EMB3003	embryo defective 3003, 2-oxoac...		Lus10006069 [exp]	4.2	0.9121
AT1G48480		RKL1	receptor-like kinase 1 (.1)		Lus10031909 [exp]	4.9	0.9198
AT1G33250			Protein of unknown function (D...		Lus10008293 [exp]	5.3	0.9084
AT5G07900			Mitochondrial transcription te...		Lus10040819 [exp]	9.4	0.8654

Compare expression of checked genes

Lus10020619 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.