Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27460 1233 / 0 sec23/sec24 transport family protein (.1) AT3G07100 102 / 6e-22 AtSEC24A, SEC24A, ERMO2 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) AT3G44340 91 / 2e-18 CEF clone eighty-four (.1.2) AT4G32640 86 / 4e-17 Sec23/Sec24 protein transport family protein (.1.2) AT2G21630 52 / 1e-06 Sec23/Sec24 protein transport family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004866 [exp] 1497 / 0 AT2G27460 1248 / 0.0 sec23/sec24 transport family protein (.1) Lus10000939 [exp] 92 / 9e-19 AT4G32640 1241 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10016597 [exp] 88 / 1e-17 AT3G07100 1212 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Lus10004122 [exp] 87 / 2e-17 AT4G32640 1209 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Lus10007190 [exp] 48 / 3e-05 AT4G01810 1314 / 0.0 Sec23/Sec24 protein transport family protein (.1) Lus10010078 [exp] 47 / 7e-05 AT4G01810 1317 / 0.0 Sec23/Sec24 protein transport family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201800 [exp] 1332 / 0 AT2G27460 1266 / 0.0 sec23/sec24 transport family protein (.1) Potri.009G163300 [exp] 1328 / 0 AT2G27460 1235 / 0.0 sec23/sec24 transport family protein (.1) Potri.008G049700 [exp] 110 / 1e-24 AT3G07100 1306 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.010G211100 [exp] 108 / 4e-24 AT3G07100 1296 / 0.0 ENDOPLASMIC RETICULUM MORPHOLOGY 2, Sec23/Sec24 protein transport family protein (.1) Potri.013G035800 [exp] 100 / 2e-21 AT4G32640 1219 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.005G049100 [exp] 97 / 2e-20 AT4G32640 1238 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.002G187100 [exp] 53 / 8e-07 AT4G01810 1352 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.014G178500 [exp] 52 / 2e-06 AT2G21630 1028 / 0.0 Sec23/Sec24 protein transport family protein (.1) Potri.019G003100 [exp] 47 / 4e-05 AT3G23660 1181 / 0.0 Sec23/Sec24 protein transport family protein (.1.2) Potri.014G112600 [exp] 44 / 0.0004 AT4G01810 1364 / 0.0 Sec23/Sec24 protein transport family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF04810 [flax] [poplar] zf-Sec23_Sec24 Sec23/Sec24 zinc finger CL0128 [flax] [poplar] vWA-like PF04811 [flax] [poplar] Sec23_trunk Sec23/Sec24 trunk domain CL0128 [flax] [poplar] PF04815 [flax] [poplar] Sec23_helical Sec23/Sec24 helical domain
Representative CDS sequence Show only first row Show all	>Lus10020622 pacid=23172363 polypeptide=Lus10020622 locus=Lus10020622.g ID=Lus10020622.BGIv1.0 annot-version=v1.0 ATGGCAGTTCGAGCAACGGTGACTCGGTTCCCGATGGACCAGGACGCGCAGGAATCGTCGGGGATCCCTTGGGGATTGACAGTCACTCCCTTCGCCAACA AGGACGAGGACGGAAAGCCGCCGGCATACGGATCCGACGGCCATCTGTTGCCCCGATGCGAGAATTGTTATTCCTACTTCAACACCTACTGCGAGCTGGA CCAGTGGGCCTGGAGCTGCGCGCTCTGCGGGACGCTCAATGGACTCACTGCTCAGGCAATTGCTCGGTATTCGCACCCGCAGTCTTGCCCCGAGATGATG TCGTCGTTCGTGGATCTCGAATTGCCTGTAGTTGAGGGAGCAGAAGACGAAATGACACAAGCTCGTCCAGTCTATGTTGCTGCTGTTGATTTATCATCTT CGGAAGAATTTTTGGAGCTTACAAAGAGTGCACTGGAAGCAGCATTGGAAGCTCTCGGTCCTGGTTCACTGTTTGGTCTAGTTACGTTCAGCCACAAAAT AGGTTTATATGATGTCCAAGGGCCCATTCCAGTTGTCAAGAATGCTTTCGTCCCTCCTGATGCAGATGGCACCCTGCCAATTGAGCTAGAAGATGTTATG CCTTTACTACAATTCTTGGCACCCGTGGATACATGTAAGGATCGTATCACAGCTGCACTTGACACTCTCAGGCCATCAACTTCGTGGGAGAGAACCACGG GTGCAGGGCAAGGTCTCGATGGTGTTTTGATGGGCGGGAGAGGATTCGGTGTAGCAATGGAAGCTCTATTTAAGTACTTGGGGTCTGAGAATGGAAACAC ATTTGCTTTAGCTAGAGTGTTTGCCTTCATCTCTGGTATACCTGATTATGGAGCTGGGCAGTTAGATACGAGGAGGTATGGTGAACAATATGCTAGTAAA GGCGAGGATGCAGATAGGGCTTTACTCCCGGAACAGACACCTTTCTACAAAGAACTGGCTGCTGTCGCTGTCCAATCAGGTGTTTGTGTTGACCTGTTTG CTGTTACAAATGAGTATACAGATTTGGCATCCCTAAAGTTTCTTAGTATTGAGAGTGGAGGTTCCTTGTTCTTCTATACGAACACTGATGACTCAACTCT GCCTCAGGATATGTACCGAATGCTTAGTCGGCCTTATGCATTTGGTTGTGTGCTGAGATTAAGGACATCTTCGGAATTCAAAATTGGTCATTCTTATGGT CATTTCTTCCCAGATCCTCAATATGAATATGTCCAACACATTTCATGCTGTGATTCCTATGCCACATATGCATACGATTTCGATTTTTCAAGTGCGGTTG GATTTTCCAGATACGCATCAGAACAGCCCGTTGTGCAGATTGCATTCCAGTACACTGTTGTCGTACCTTCTGAAGAACTAGCAAGCTCAGGATTGGTTTC TACAAGTAGGGGTAAGCATTTGCTTAAGAGGAGAATAAGGATCCGCACATTACAATTTGGAGCTGCTAGAAATGTCAATGAACTCTATGACAGCGTTGAT CCTGAAGCCGTACTATCAGTGCTCGTACACAAGGTTATCTTGGAATCTCTAGACCAAGGAGTTCGGGAGGGAAGGATGTTGCTTCATGATTGGCTAGTCA TCCTAACCGCTCAATACAACGATGCTTATAAAATCGTGCAATATAAGAACGGAAGTGCCATAGGTGCGCAGGTAGACGTTGCATTCTCGCAGTGTCCACA GATGCAGCCCCTACCGCGCTTAGTCTTCGCTCTGCTCCGAAATCCTCTCCTCCTCTTCCATGAAGAAGGCGTACACCCTGACTATCGGATTTATCTTCAA TGCCTTTTCAGTGCACTAGAACCAAGTTCTCTTCACCGAGCTGTATATCCAGTATTGTCATCATACTCAACCCCAGACAAACAAGCCTATCCGCGTCACT CGTTGAGCCGTGCTGCACTGATCACTAGTGGCAGTCCGATATTCTTCCTCGACGCATTCACAACTCTAATCGTTTTCTACTCCTCGACAGCAGACCCATC GCTTCCTTTCCCACCACCACAGGACTGTCTGCTACGGAGTACGATCAACAAACTCAAGCAAGAGAGGAGCATCACTCCCAAATTGATATTCATTCGTGGA GGCCACGAGGATGCGACGGCCTTCGAGAACTACCTGATCGAGGAACAGGACGTCGATGGCAGCGGCTTCACTAGTGTCATGGGTTTTGTCTCGTTCCTCG AAGATGTCACCCGGGGCGTCTTGGAATACATGAAATAG
AA sequence Show only first row Show all	>Lus10020622 pacid=23172363 polypeptide=Lus10020622 locus=Lus10020622.g ID=Lus10020622.BGIv1.0 annot-version=v1.0 MAVRATVTRFPMDQDAQESSGIPWGLTVTPFANKDEDGKPPAYGSDGHLLPRCENCYSYFNTYCELDQWAWSCALCGTLNGLTAQAIARYSHPQSCPEMM SSFVDLELPVVEGAEDEMTQARPVYVAAVDLSSSEEFLELTKSALEAALEALGPGSLFGLVTFSHKIGLYDVQGPIPVVKNAFVPPDADGTLPIELEDVM PLLQFLAPVDTCKDRITAALDTLRPSTSWERTTGAGQGLDGVLMGGRGFGVAMEALFKYLGSENGNTFALARVFAFISGIPDYGAGQLDTRRYGEQYASK GEDADRALLPEQTPFYKELAAVAVQSGVCVDLFAVTNEYTDLASLKFLSIESGGSLFFYTNTDDSTLPQDMYRMLSRPYAFGCVLRLRTSSEFKIGHSYG HFFPDPQYEYVQHISCCDSYATYAYDFDFSSAVGFSRYASEQPVVQIAFQYTVVVPSEELASSGLVSTSRGKHLLKRRIRIRTLQFGAARNVNELYDSVD PEAVLSVLVHKVILESLDQGVREGRMLLHDWLVILTAQYNDAYKIVQYKNGSAIGAQVDVAFSQCPQMQPLPRLVFALLRNPLLLFHEEGVHPDYRIYLQ CLFSALEPSSLHRAVYPVLSSYSTPDKQAYPRHSLSRAALITSGSPIFFLDAFTTLIVFYSSTADPSLPFPPPQDCLLRSTINKLKQERSITPKLIFIRG GHEDATAFENYLIEEQDVDGSGFTSVMGFVSFLEDVTRGVLEYMK

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27460			sec23/sec24 transport family p...		Lus10020622 [exp]	0	1
AT4G16180			unknown protein		Lus10017062 [exp]	2.2	0.9268
AT5G20730	ARF	MSG1, IAA21, BI...	MASSUGU 1, indole-3-acetic aci...		Lus10033635 [exp]	3.2	0.8986
AT4G23460			Adaptin family protein (.1)		Lus10028775 [exp]	3.5	0.9138
AT3G07660			Kinase-related protein of unkn...		Lus10041089 [exp]	4.2	0.9169
AT1G79150			binding (.1)		Lus10034234 [exp]	5.3	0.9151
AT5G57870		eIFiso4G1	eukaryotic translation Initiat...		Lus10010782 [exp]	5.3	0.9234
AT3G07660			Kinase-related protein of unkn...		Lus10036414 [exp]	6.3	0.9145
AT1G51350			ARM repeat superfamily protein...		Lus10002562 [exp]	7.1	0.8857
AT2G27100	C2H2ZnF	SE	C2H2 zinc-finger protein SERRA...		Lus10026766 [exp]	9.7	0.8835
AT1G76950		PRAF1	Regulator of chromosome conden...		Lus10028600 [exp]	10.6	0.8869

Compare expression of checked genes

Lus10020622 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.