Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004865 [exp] 45 / 5e-06 AT2G27730 112 / 3e-32 copper ion binding (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020623 pacid=23172343 polypeptide=Lus10020623 locus=Lus10020623.g ID=Lus10020623.BGIv1.0 annot-version=v1.0 ATGGGCTTTGAGTCTTTGACACCCATGGAATATGGGAATGTGTCCAGCCCTGGGCAATGGCCCAAAAGTACACACACCTCTCTCCGTTGCGCTCCTTGTG TCAAAAACCTCTGTCCCCTTCCTCAAGCTTGTTCGTCTGCTGATTTTCTTCGCTCTGGTAAATCACTAAACCCTAGTTTCAGTCGTCCTCTTCGTTGCGT ATGGACGATTCCTCCTGCTCTACTTCTATCTTGCTTTGCAGTTTCAGCGAGCGATTTCTTCATTTTTTCACGCTTGTTTCAGTTTTTTGCGATTTTTGCT CTTATGTTTGTGTTCATTTGGCTCCGCTCACCTGCGTCGACAGCAAGGAGTGCGAATGAGACTGATCCCCTCAATTCTGCTTGGCTACCGGTGTTTTTGT TTCTTTGTATTGATTCACGGTCCATTTTCTCGGTAGTTTTCGGTTGA
AA sequence Show only first row Show all	>Lus10020623 pacid=23172343 polypeptide=Lus10020623 locus=Lus10020623.g ID=Lus10020623.BGIv1.0 annot-version=v1.0 MGFESLTPMEYGNVSSPGQWPKSTHTSLRCAPCVKNLCPLPQACSSADFLRSGKSLNPSFSRPLRCVWTIPPALLLSCFAVSASDFFIFSRLFQFFAIFA LMFVFIWLRSPASTARSANETDPLNSAWLPVFLFLCIDSRSIFSVVFG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020623 [exp]	0	1
AT1G24190		SNL3, AtSin3	ARABIDOPSIS THALIANA SIN3 HOMO...		Lus10022887 [exp]	1.7	0.7436
AT1G63690		ATSPPL2	SIGNAL PEPTIDE PEPTIDASE-LIKE ...		Lus10035484 [exp]	7.5	0.7089
AT1G60030		ATNAT7	ARABIDOPSIS NUCLEOBASE-ASCORBA...		Lus10005717 [exp]	12.1	0.7415
AT5G15070			Phosphoglycerate mutase-like f...		Lus10005263 [exp]	16.5	0.7272
AT1G50420	GRAS	SCL-3, SCL3	scarecrow-like 3 (.1)		Lus10016892 [exp]	19.4	0.7263
AT3G29390		RIK	RS2-interacting KH protein (.1...		Lus10032979 [exp]	22.4	0.6754
AT5G06540			Pentatricopeptide repeat (PPR)...		Lus10031424 [exp]	25.3	0.7178
AT5G42790		ARS5, ATPSM30, ...	ARSENIC TOLERANCE 5, proteasom...		Lus10007395 [exp]	25.7	0.6836
AT3G48010		ATCNGC16	cyclic nucleotide-gated channe...		Lus10042132 [exp]	27.6	0.7179
AT2G47790			Transducin/WD40 repeat-like su...		Lus10003441 [exp]	28.5	0.7058

Compare expression of checked genes

Lus10020623 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.