Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G22400 360 / 1e-121 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT3G11490 309 / 4e-102 rac GTPase activating protein (.1) AT2G46710 292 / 3e-95 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT1G08340 286 / 2e-94 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) AT4G03100 287 / 1e-93 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004864 [exp] 611 / 0 AT5G22400 326 / 6e-108 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10022700 [exp] 350 / 4e-117 AT5G22400 459 / 6e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10014213 [exp] 347 / 3e-116 AT5G22400 462 / 4e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10005998 [exp] 308 / 3e-101 AT2G46710 460 / 8e-160 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10030213 [exp] 304 / 4e-99 AT2G46710 440 / 1e-151 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10024768 [exp] 281 / 2e-91 AT4G03100 475 / 6e-167 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Lus10009778 [exp] 280 / 1e-90 AT4G03100 456 / 7e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G162900 [exp] 413 / 5e-142 AT5G22400 457 / 3e-158 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.004G201600 [exp] 400 / 4e-137 AT5G22400 429 / 3e-147 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.006G211200 [exp] 370 / 1e-124 AT5G22400 461 / 2e-159 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.016G078200 [exp] 360 / 3e-121 AT5G22400 482 / 7e-168 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.002G176800 [exp] 303 / 4e-99 AT2G46710 477 / 3e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G135570 [exp] 301 / 3e-98 AT4G03100 500 / 6e-176 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1) Potri.014G103600 [exp] 298 / 5e-97 AT2G46710 478 / 2e-166 Rho GTPase activating protein with PAK-box/P21-Rho-binding domain (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0409 [flax] [poplar] GAP PF00620 [flax] [poplar] RhoGAP RhoGAP domain CL0409 [flax] [poplar] PF00786 [flax] [poplar] PBD P21-Rho-binding domain
Representative CDS sequence Show only first row Show all	>Lus10020625 pacid=23172357 polypeptide=Lus10020625 locus=Lus10020625.g ID=Lus10020625.BGIv1.0 annot-version=v1.0 ATGACCCAAGTCCAGCTCCTTCACCAACCTCCTCCCCATTCTTCTTCTTCTTCTTCCTCTTTGGGGGATAACGTCGAACAGCTGGTGGGCGTGGCCGATT GCGGTAGTCAATGTGATTTGTCGTTGAAAGAGAAGGAAAGGGCTAATAATCAGCTTTCCCTGTTGGCGACCCTGATCAGGAAGTCATTGGCGGCTTGTAA TAAGAGCGGCCATTGGAAGCAGCTCTCTGCGATGGAGATCAGCTGGCCTAGCAATGTCCGCCATGTCGCCCATGTTACCTTTGATAGGTTTAATGGGTTC TTGGGTTTGCCTATTGAGTTTGAACCTGATGTCCCCAGACGAGCCCCCAGTGCTAGTGTAGCTGGATCTCCACAGGCTGAAGGGATTTTCAGAATTAGTG CAGAGAACAGTCAGGAGGAGTATGTTAGGGATCAACTGAATAGTGGAGTGGTGCCAGAAGGTGTTGGTGCGCATTGTTTGGCTGGACTTATCAAGGCTTG GTTTAGGGAACTTCCAACTGGGATTCTGGATTCTCTGCAAACCGAACAAGTCATTCAATCCCAAACTGAAGACGATTGTGCCGAACTTGCGAGGAATCTG CCACCAACTGAATCAGCGCTGTTGGATTGGGCCATCAACTTGATGGCTGACGTTGTTGAACAAGAACACGCAAACAAGATGAATGCTCGCAACGTAGCCA CTGTGTTTGCACCAAACATGACTCAGATGGATGATCCTTTGACAGCACTAATGTATGCAGTCCAGGTGATGAACTTCCTAAAGACCCTCATCAACCGAAC ACTTCGCGAAAGGGAAGATTCTGTCGTCGATCCAACTCTGGTTTTGCGACTCGAGCCATTCGATGGGAATGGTAACCAGAGCCCTTCACAGTCATGTTCA CGGACCAGGGAAGACAACAAGAGAACCGAAGGCTTTAGTAGTGAGGATGAACAATCTGTTACTACACCAGATGAAGATGATTGCAGTTGCACAACCCAAC TCGAAAAGATAACTGGCCAAACTGAACAATCAAGTGAGATTTTTGACAAAACCGATGATCCAAACTCCGAAGGCCAACCAAGCAACTCCATCCCCAGAAA GATCTCTGGTAAGCAGGCACTCGTACTTCATTTAACACCACCACAGCAATCTATCCTCCATTTAGCCTCACCGGTCGAGAAGACTCGAGGATGA
AA sequence Show only first row Show all	>Lus10020625 pacid=23172357 polypeptide=Lus10020625 locus=Lus10020625.g ID=Lus10020625.BGIv1.0 annot-version=v1.0 MTQVQLLHQPPPHSSSSSSSLGDNVEQLVGVADCGSQCDLSLKEKERANNQLSLLATLIRKSLAACNKSGHWKQLSAMEISWPSNVRHVAHVTFDRFNGF LGLPIEFEPDVPRRAPSASVAGSPQAEGIFRISAENSQEEYVRDQLNSGVVPEGVGAHCLAGLIKAWFRELPTGILDSLQTEQVIQSQTEDDCAELARNL PPTESALLDWAINLMADVVEQEHANKMNARNVATVFAPNMTQMDDPLTALMYAVQVMNFLKTLINRTLREREDSVVDPTLVLRLEPFDGNGNQSPSQSCS RTREDNKRTEGFSSEDEQSVTTPDEDDCSCTTQLEKITGQTEQSSEIFDKTDDPNSEGQPSNSIPRKISGKQALVLHLTPPQQSILHLASPVEKTRG

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G22400			Rho GTPase activating protein ...		Lus10020625 [exp]	0	1
AT4G32010	B3	HSL1, HSI2-L1, ...	VP1/ABI3-LIKE 2, HSI2-like 1 (...		Lus10025226 [exp]	3.9	0.7867
AT2G20990		SYT1, NTMC2TYPE...	SYNAPTOTAGMIN 1, ARABIDOPSIS T...		Lus10005069 [exp]	4.9	0.7509
AT5G62890			Xanthine/uracil permease famil...		Lus10043460 [exp]	5.1	0.7896
AT3G23090			TPX2 (targeting protein for Xk...		Lus10022213 [exp]	8.8	0.8085
AT3G06350		EMB3004, MEE32	MATERNAL EFFECT EMBRYO ARREST ...		Lus10033981 [exp]	13.0	0.7761
AT1G73590		ATPIN1, PIN1	ARABIDOPSIS THALIANA PIN-FORME...		Lus10018006 [exp]	24.7	0.7416
AT3G63120		CYCP1;1	cyclin p1;1 (.1)		Lus10022038 [exp]	31.0	0.7064
AT4G11280		ATACS6, ACS6	1-aminocyclopropane-1-carboxyl...		Lus10028760 [exp]	34.5	0.7119
AT5G37790			Protein kinase superfamily pro...		Lus10028518 [exp]	46.3	0.7439
AT3G52450		PUB22	plant U-box 22 (.1)		Lus10004096 [exp]	51.6	0.7459

Compare expression of checked genes

Lus10020625 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.