Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27450 556 / 0 CPA, ATNLP1, NLP1 nitrilase-like protein 1 (.1.2) AT5G64370 95 / 6e-22 PYD3, BETA-UP PYRIMIDINE 3, beta-ureidopropionase (.1) AT5G12040 92 / 3e-21 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) AT5G22300 74 / 8e-15 AtNIT4, NIT4 nitrilase 4 (.1) AT3G44320 62 / 1e-10 AtNIT3, NIT3 nitrilase 3 (.1) AT3G44310 60 / 5e-10 NITI, NIT1, ATNIT1 A. THALIANA NITRILASE 1, nitrilase 1 (.1.2.3) AT3G44300 53 / 9e-08 AtNIT2, NIT2 nitrilase 2 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004862 [exp] 594 / 0 AT2G27450 531 / 0.0 nitrilase-like protein 1 (.1.2) Lus10030303 [exp] 96 / 9e-23 AT4G08790 474 / 1e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10026464 [exp] 96 / 2e-22 AT5G12040 526 / 0.0 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Lus10001975 [exp] 94 / 1e-21 AT4G08790 469 / 6e-168 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Lus10020436 [exp] 88 / 2e-19 AT5G64370 669 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10007065 [exp] 87 / 3e-19 AT5G64370 673 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Lus10005201 [exp] 76 / 3e-15 AT5G22300 559 / 0.0 nitrilase 4 (.1) Lus10013313 [exp] 70 / 2e-13 AT5G22300 561 / 0.0 nitrilase 4 (.1) Lus10021322 [exp] 67 / 2e-12 AT5G22300 265 / 7e-85 nitrilase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G201400 [exp] 570 / 0 AT2G27450 548 / 0.0 nitrilase-like protein 1 (.1.2) Potri.009G162600 [exp] 228 / 1e-74 AT2G27450 218 / 3e-71 nitrilase-like protein 1 (.1.2) Potri.010G214600 [exp] 95 / 3e-22 AT4G08790 474 / 8e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1) Potri.007G115900 [exp] 87 / 4e-19 AT5G64370 720 / 0.0 PYRIMIDINE 3, beta-ureidopropionase (.1) Potri.006G222900 [exp] 84 / 2e-18 AT5G12040 479 / 5e-170 Nitrilase/cyanide hydratase and apolipoprotein N-acyltransferase family protein (.1.2) Potri.004G199600 [exp] 72 / 3e-14 AT5G22300 578 / 0.0 nitrilase 4 (.1) Potri.006G207700 [exp] 66 / 4e-12 AT5G22300 369 / 2e-126 nitrilase 4 (.1) Potri.016G074200 [exp] 66 / 6e-12 AT5G22300 358 / 1e-121 nitrilase 4 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF00795 [flax] [poplar] CN_hydrolase Carbon-nitrogen hydrolase
Representative CDS sequence Show only first row Show all	>Lus10020627 pacid=23172365 polypeptide=Lus10020627 locus=Lus10020627.g ID=Lus10020627.BGIv1.0 annot-version=v1.0 ATGGAGAAGGGGGAAAACGGAAGAGAAGTGACGGTCTCAGCTCTGCAATTCGCTTGCACCGATGACGTCTCCACTAATGTCGCCACCGCCGAGAGGTTGG TACGAGCTGCTCACTCGAAGGGTGCAAATATCATTCTTATTCAGGAACTGTTCGAGGGGTACTACTTCTGTCAAGCACAAAGGGAGGACTATATCCAGCG AGCTAAACCTTATAAAGATCACCCTACAATTCTGAGGATGCAGAAACTTGCGAAAGAGCTAGGTGTCGCTATACCAGTGAGCTTCTTTGAAGAGGCCAAC AATGCTCATTACAATTCCATTGCTATAATCGATGCTGATGGGACTGACCTTGGCCTCTACAGAAAGTCTCACATTCCTGATGGACCAGGTTACCAGGAGA AGTTTTACTTCAATCCAGGCGATACCGGCTTCAAGGTCTTTCAAACCAAGTTCGCAAAGATTGGAGTAGCTATATGTTGGGATCAGTGGTTTCCTGAGGC GGCCAGAGCCATGGCTCTACAAGGTGCTGAAATATTGTTCTACCCTACTGCTATTGGCTCTGAACCTCAAGATGGCGGGCTTGATTCTCGTGATCACTGG AAGCGAGTCATGCAAGGCCATGCTGGAGCTAATTTGGTACCTTTAGTGGCATCAAACCGAATCGGAAAGGAGATCATAGAGACAGAGCATGGGAAAAGCG AGATAACGTTCTACGGGAACTCGTTTATAGCAGGACCAACCGGAGAAATCGTTGCACTCGCGGATGACAAAGATGAAGCTGTCCTTGTTGCAAAGTTCGA TCTCGATAAGATCAAGTCTACCAGACATAGCTGGGGAGTATTCCGAGATCGGCGTCCAGATCTATACAAGGTGCTCCTAACCTTAGATGGTAGTAACTCA TCTCTGTAA
AA sequence Show only first row Show all	>Lus10020627 pacid=23172365 polypeptide=Lus10020627 locus=Lus10020627.g ID=Lus10020627.BGIv1.0 annot-version=v1.0 MEKGENGREVTVSALQFACTDDVSTNVATAERLVRAAHSKGANIILIQELFEGYYFCQAQREDYIQRAKPYKDHPTILRMQKLAKELGVAIPVSFFEEAN NAHYNSIAIIDADGTDLGLYRKSHIPDGPGYQEKFYFNPGDTGFKVFQTKFAKIGVAICWDQWFPEAARAMALQGAEILFYPTAIGSEPQDGGLDSRDHW KRVMQGHAGANLVPLVASNRIGKEIIETEHGKSEITFYGNSFIAGPTGEIVALADDKDEAVLVAKFDLDKIKSTRHSWGVFRDRRPDLYKVLLTLDGSNS SL

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27450		CPA, ATNLP1, NL...	nitrilase-like protein 1 (.1.2...		Lus10020627 [exp]	0	1
AT1G14300			ARM repeat superfamily protein...		Lus10036742 [exp]	5.3	0.8623
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10020016 [exp]	5.5	0.8712
AT4G33950		ATOST1, P44, SR...	SNF1-RELATED PROTEIN KINASE 2....		Lus10004382 [exp]	9.6	0.8897
AT3G52105			unknown protein		Lus10019704 [exp]	10.0	0.8601
AT1G79910			Regulator of Vps4 activity in ...		Lus10037536 [exp]	10.1	0.8503
AT2G40600			appr-1-p processing enzyme fam...		Lus10034226 [exp]	14.7	0.8480
AT1G65520		PEC11, ECHIC, A...	"delta\(3\), delta\(2\)-enoyl ...		Lus10005158 [exp]	21.3	0.8806
AT4G14710		ATARD2	RmlC-like cupins superfamily p...		Lus10039375 [exp]	22.1	0.8668
AT4G37670		NAGS2	N-acetyl-l-glutamate synthase ...		Lus10019262 [exp]	22.6	0.8776
AT2G14440			Leucine-rich repeat protein ki...		Lus10041860 [exp]	29.8	0.8771

Compare expression of checked genes

Lus10020627 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.