Plant FIBer expression Database

Lus10020628 [FLAX]


External link
JGI Phytozome v13
Symbol
Arabidopsis homologues
Locus ID BLAST score/e-value TF class Alias TAIR10 short description
AT3G44380 164 / 2e-52 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Paralogs
Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Lus10004861
[exp]
231 / 8e-79 AT3G44380 251 / 3e-86 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
Poplar homologues
Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description
Potri.001G218400
[exp]
161 / 4e-51 AT3G44380 229 / 1e-77 Late embryogenesis abundant (LEA) hydroxyproline-rich glycoprotein family (.1)
PFAM info
Representative CDS sequence
>Lus10020628 pacid=23172361 polypeptide=Lus10020628 locus=Lus10020628.g ID=Lus10020628.BGIv1.0 annot-version=v1.0
ATGGCGAGCAAAAGCGCTAGGAAATGGAACTGGGTCTCCTTCATCGCCGGAGGAGTCTCCTCCATCGCCGGAGGGGCCTCCGCGGCGGCGGCTGCCCTCT
TAATCCGGGCGAAGCCCAAGGACCCGACGTTCCACCTAATCTCCATCAGCCTCAGCTCCTTCAAGCTCAATTTTCCCGTCCTCGACGCCGAGCTTACCCT
CACCGTCCACGTCACGAACCCCAACGTCGTCCCGCTGCCGGCTCGTCTTGATGGGCTTGAGCTGGCCCACCACGCGAAGCAGTTTTTAAATGACGTGGCG
ACGAGGGAGATGGTGCTGGACGCCAGGGTGAACATCGGCGGCGAGGCGAAGATGATGTGGTGGGACCACGGGTTTATGATCCACGTGGAGAGTAAGGTGA
CCGTTGATCCGCTGTTTCTGGATGTTGTTGAGCAGGAGAATAAGTCGCAGATTGATGTAATGCTTGGTTAG
AA sequence
>Lus10020628 pacid=23172361 polypeptide=Lus10020628 locus=Lus10020628.g ID=Lus10020628.BGIv1.0 annot-version=v1.0
MASKSARKWNWVSFIAGGVSSIAGGASAAAAALLIRAKPKDPTFHLISISLSSFKLNFPVLDAELTLTVHVTNPNVVPLPARLDGLELAHHAKQFLNDVA
TREMVLDARVNIGGEAKMMWWDHGFMIHVESKVTVDPLFLDVVEQENKSQIDVMLG

DESeq2's median of ratios [FLAX]

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Coexpressed genes

Only top 10 genes are shown Show allDownload tab-delimited text
Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.
At best At TF class At alias At description Locus MR r Symbol HYPR_s2_CTRR_s2_FoxR_s4_CTRR_s4_FoxR_r1_CTRR_r1_FoxR_r3_CTRR_r3_FoxR_r1s2_CTRR_r1s2_FoxR_r3s2_CTRR_r3s2_FoxR_s6_CTRR_s6_Al4R_s6_Al12R_s6_Al24R_s8_CTRR_s8_Al4R_s8_Al12R_s8_Al24R_r5_CTRR_r5_Al4R_r5_Al12R_r5_Al24R_r7_CTRR_r7_Al4R_r7_Al12R_r7_Al24LEAF_NLEAF_PLEAF_NPKSAMAR_BetAR_rdfcPARTOP_BetTOP_rdfiFIBaiFIBbMID_BetMID_rdftFIBatFIB_GrtFIB_LitFIB_BitFIBbtFIBb_PUL8tFIBb_PUL24tFIBb_PUL96tFIBb_OPP8tFIBb_OPP24tFIBb_OPP96sXYLasXYLbsXYLb_PUL8sXYLb_PUL24sXYLb_PUL96sXYLb_OPP8sXYLb_OPP24sXYLb_OPP96
AT3G44380 Late embryogenesis abundant (L... Lus10020628
[exp]
0 1
AT3G44380 Late embryogenesis abundant (L... Lus10004861
[exp]
4.0 0.6681
AT2G19800 MIOX2 myo-inositol oxygenase 2 (.1) Lus10006198
[exp]
8.3 0.7157
AT3G60500 G3, CER7 ECERIFERUM 7, 3'-5'-exoribonuc... Lus10036022
[exp]
16.1 0.7355
AT3G10670 ABCI6, ATNAP7 ATP-binding cassette I6, non-i... Lus10034152
[exp]
22.4 0.6992
AT3G09250 Nuclear transport factor 2 (NT... Lus10021504
[exp]
23.4 0.7220
AT5G40530 S-adenosyl-L-methionine-depend... Lus10022276
[exp]
34.4 0.7146
AT1G27150 Tetratricopeptide repeat (TPR)... Lus10036690
[exp]
36.1 0.6914
AT3G50390 Transducin/WD40 repeat-like su... Lus10009510
[exp]
44.2 0.6263
AT4G31820 MAB4, ENP, NPY1 NAKED PINS IN YUC MUTANTS 1, M... Lus10042414
[exp]
45.9 0.6653
AT2G45630 D-isomer specific 2-hydroxyaci... Lus10040679
[exp]
50.4 0.6264

Lus10020628 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.