Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02335 125 / 3e-36 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G18970 123 / 3e-35 GLP4 germin-like protein 4 (.1) AT3G04200 119 / 1e-33 RmlC-like cupins superfamily protein (.1) AT3G10080 118 / 2e-33 RmlC-like cupins superfamily protein (.1) AT1G18980 116 / 1e-32 RmlC-like cupins superfamily protein (.1) AT1G09560 116 / 2e-32 GLP5 germin-like protein 5 (.1) AT3G05950 115 / 6e-32 RmlC-like cupins superfamily protein (.1) AT5G39110 113 / 2e-31 RmlC-like cupins superfamily protein (.1) AT5G39150 113 / 2e-31 RmlC-like cupins superfamily protein (.1) AT5G39120 113 / 2e-31 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004857 [exp] 321 / 1e-113 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004856 [exp] 227 / 4e-76 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 226 / 6e-76 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004855 [exp] 226 / 9e-76 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020632 [exp] 222 / 1e-74 AT1G02335 129 / 1e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10034191 [exp] 187 / 1e-60 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10004858 [exp] 185 / 2e-59 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10043393 [exp] 171 / 2e-54 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10009254 [exp] 114 / 3e-31 AT3G62020 306 / 1e-106 germin-like protein 10 (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.004G194600 [exp] 231 / 5e-78 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.009G157100 [exp] 227 / 3e-76 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.008G016700 [exp] 223 / 7e-75 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240500 [exp] 220 / 1e-73 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240700 [exp] 219 / 2e-73 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.008G084300 [exp] 218 / 2e-72 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 210 / 2e-69 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.013G116500 [exp] 162 / 1e-50 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.013G000500 [exp] 120 / 2e-34 AT1G09560 311 / 1e-108 germin-like protein 5 (.1) Potri.005G001300 [exp] 118 / 2e-33 AT3G62020 309 / 5e-108 germin-like protein 10 (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10020631 pacid=23172307 polypeptide=Lus10020631 locus=Lus10020631.g ID=Lus10020631.BGIv1.0 annot-version=v1.0 ATGGCTGCAGATCCAGACATCCTCACAGACTTCATCCTCCCACAAAACTCCACAACCAACACCACAAGCCAGTTCTTCACATTCTCAGGCATGAGGTTAA TCTTCCACCAAAGGCCACAAGACTTCACCATAGCCAAGGCCAGCCTAGCCCAATTCCCAGCTCTCGAAGGCCAGAGCGTCTCTTACGCTGTCCTCCAATT CCCTTCAGGTACCACCAACCCTCCACACATCCACCCTCGAGCATCCGAGCTGCTCTTCCTCACCCGCGGCAGCCTCCAAGTAGGGTTCGTCGACACGGCC AACAAGCTCTATACTCAAACTTTACAGCTCGGTGACATGTTTGTGTTCCCCAAGGGTCTAGTCCACTTCCAGTACAATGTTGGGAAAGTTACTGCTGTGG CATTCTCTGCCTTTGGGAGTGCCAATGCTGGAACTGTTTCACTTCCACCTACTCTGTTCACCAGTGGGATTGATGATGATGTTTTGGTTAAAGGGTTCAA GAGTGATGTCACTACTATTCAGTCTCTCAAGGCTGGCCTTTCTGCTAAGAATTGA
AA sequence Show only first row Show all	>Lus10020631 pacid=23172307 polypeptide=Lus10020631 locus=Lus10020631.g ID=Lus10020631.BGIv1.0 annot-version=v1.0 MAADPDILTDFILPQNSTTNTTSQFFTFSGMRLIFHQRPQDFTIAKASLAQFPALEGQSVSYAVLQFPSGTTNPPHIHPRASELLFLTRGSLQVGFVDTA NKLYTQTLQLGDMFVFPKGLVHFQYNVGKVTAVAFSAFGSANAGTVSLPPTLFTSGIDDDVLVKGFKSDVTTIQSLKAGLSAKN

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G10080			RmlC-like cupins superfamily p...		Lus10020631 [exp]	0	1
AT4G01030			pentatricopeptide (PPR) repeat...		Lus10017350 [exp]	1.0	0.9236
AT1G36390			Co-chaperone GrpE family prote...		Lus10042696 [exp]	1.4	0.9156
AT4G03270		CYCD6;1	Cyclin D6;1 (.1)		Lus10002587 [exp]	3.0	0.8989
					Lus10006808 [exp]	3.5	0.8967
AT4G33280	B3	REM16	AP2/B3-like transcriptional fa...		Lus10032873 [exp]	4.7	0.8304
AT1G17630			Pentatricopeptide repeat (PPR-...		Lus10002512 [exp]	5.2	0.8397
AT1G55800			Domain of unknown function (DU...		Lus10016346 [exp]	5.3	0.8660
					Lus10008111 [exp]	5.7	0.8128
AT1G80080		AtRLP17, TMM	TOO MANY MOUTHS, Receptor Like...		Lus10042458 [exp]	5.9	0.8907
AT2G32000			DNA topoisomerase, type IA, co...		Lus10021692 [exp]	7.7	0.8334

Compare expression of checked genes

Lus10020631 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.