Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02335 115 / 2e-32 GL22 germin-like protein subfamily 2 member 2 precursor (.1) AT1G09560 105 / 1e-28 GLP5 germin-like protein 5 (.1) AT1G18980 104 / 5e-28 RmlC-like cupins superfamily protein (.1) AT1G18970 100 / 2e-26 GLP4 germin-like protein 4 (.1) AT4G14630 99 / 5e-26 GLP9 germin-like protein 9 (.1) AT3G62020 98 / 1e-25 GLP10 germin-like protein 10 (.1.2) AT5G38960 98 / 1e-25 RmlC-like cupins superfamily protein (.1) AT3G10080 98 / 3e-25 RmlC-like cupins superfamily protein (.1) AT5G26700 96 / 7e-25 RmlC-like cupins superfamily protein (.1) AT3G04200 93 / 2e-23 RmlC-like cupins superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004855 [exp] 312 / 6e-110 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004856 [exp] 310 / 8e-109 AT1G02335 129 / 3e-37 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004854 [exp] 289 / 8e-101 AT1G02335 137 / 2e-40 germin-like protein subfamily 2 member 2 precursor (.1) Lus10020631 [exp] 215 / 9e-72 AT3G10080 132 / 7e-39 RmlC-like cupins superfamily protein (.1) Lus10004857 [exp] 210 / 1e-69 AT1G02335 140 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Lus10004858 [exp] 191 / 4e-62 AT1G02335 123 / 7e-35 germin-like protein subfamily 2 member 2 precursor (.1) Lus10034191 [exp] 181 / 5e-58 AT1G18970 136 / 4e-40 germin-like protein 4 (.1) Lus10043393 [exp] 168 / 4e-53 AT1G18970 123 / 3e-35 germin-like protein 4 (.1) Lus10030047 [exp] 106 / 8e-29 AT3G05950 256 / 7e-87 RmlC-like cupins superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G157100 [exp] 252 / 3e-86 AT1G09560 105 / 3e-28 germin-like protein 5 (.1) Potri.004G194600 [exp] 247 / 5e-84 AT3G62020 129 / 4e-37 germin-like protein 10 (.1.2) Potri.010G240700 [exp] 219 / 5e-73 AT1G02335 141 / 4e-42 germin-like protein subfamily 2 member 2 precursor (.1) Potri.008G084300 [exp] 209 / 3e-69 AT1G02335 147 / 3e-44 germin-like protein subfamily 2 member 2 precursor (.1) Potri.010G240600 [exp] 209 / 4e-69 AT3G62020 112 / 3e-31 germin-like protein 10 (.1.2) Potri.008G016700 [exp] 199 / 1e-65 AT1G18980 122 / 6e-35 RmlC-like cupins superfamily protein (.1) Potri.010G240500 [exp] 190 / 1e-61 AT3G04200 123 / 5e-35 RmlC-like cupins superfamily protein (.1) Potri.013G116500 [exp] 171 / 3e-54 AT1G18970 70 / 1e-14 germin-like protein 4 (.1) Potri.001G465100 [exp] 114 / 1e-31 AT5G39160 253 / 8e-86 RmlC-like cupins superfamily protein (.1.2.3) Potri.011G163300 [exp] 110 / 2e-30 AT5G39160 257 / 2e-87 RmlC-like cupins superfamily protein (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0029 [flax] [poplar] Cupin PF00190 [flax] [poplar] Cupin_1 Cupin
Representative CDS sequence Show only first row Show all	>Lus10020632 pacid=23172269 polypeptide=Lus10020632 locus=Lus10020632.g ID=Lus10020632.BGIv1.0 annot-version=v1.0 ATGGCGATTTCCGGCGATCCGGATATCCTTACGGACTTCGTAACCCCACCAAACACTAATAATATCGATGGTTCGTTCTTCACTTTCAAAGGGTTCCAAT TCCTAGTCAACGGCACTCAGATGTCTCCTGCATTCAAAGTTGTGAAGGCGAGCAAGGCTGAGTTCCCCGCACTCGATGGGCAAAGCGTATCGTACGCTAC TCTCGTGTTCCCATCGGGGACGACCAACCCACCTCACACCCACCCTCGCTCCGCTGAGCTCCTCTTTGTCCTCGATGGGTCGCTCCAGGTTGGATTCATC GATACCACCAACAAGCTCTTCACTCAAACATTGCAGGTGGGTGACATGTTCATATTTCCCAAGGGACTTGTTCACTTCCAGTATAATGCTGGAAACGGTA CCACGATAGCTATCTCCGCATTCGGGAGTGCAAGTGCTGGAACAGTGTCACTTCCCGGGACACTCTTCGCGACCAACATCGATGATAACGTATTGGCTAA GTCTTTCAAGACTGATATCTCTGTTATCCAAGGTCTCAAGGCTGGCCTAAAGGCCTAG
AA sequence Show only first row Show all	>Lus10020632 pacid=23172269 polypeptide=Lus10020632 locus=Lus10020632.g ID=Lus10020632.BGIv1.0 annot-version=v1.0 MAISGDPDILTDFVTPPNTNNIDGSFFTFKGFQFLVNGTQMSPAFKVVKASKAEFPALDGQSVSYATLVFPSGTTNPPHTHPRSAELLFVLDGSLQVGFI DTTNKLFTQTLQVGDMFIFPKGLVHFQYNAGNGTTIAISAFGSASAGTVSLPGTLFATNIDDNVLAKSFKTDISVIQGLKAGLKA

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02335		GL22	germin-like protein subfamily ...		Lus10020632 [exp]	0	1
					Lus10038463 [exp]	3.0	0.9993
AT4G03220			Protein with RNI-like/FBD-like...		Lus10023567 [exp]	4.7	0.9983
AT2G03220		ATFUT1, ATFT1, ...	MURUS 2, ARABIDOPSIS THALIANA ...		Lus10024077 [exp]	5.7	0.9983
					Lus10005830 [exp]	6.6	0.9983
AT2G28180		CHX08, ATCHX8	CATION/H+ EXCHANGER 8, Cation...		Lus10021415 [exp]	6.8	0.9553
AT5G45120			Eukaryotic aspartyl protease f...		Lus10040624 [exp]	7.0	0.9481
					Lus10009618 [exp]	7.4	0.9983
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10019872 [exp]	7.6	0.9777
AT5G49690			UDP-Glycosyltransferase superf...		Lus10002351 [exp]	7.9	0.9304
AT5G59810		ATSBT5.4	Subtilase family protein (.1)		Lus10039085 [exp]	8.1	0.9983

Compare expression of checked genes

Lus10020632 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.