Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10010883 [exp] 186 / 5e-57 ND / Lus10000293 [exp] 133 / 1e-35 ND 48 / 2e-05 Lus10001304 [exp] 131 / 1e-34 AT5G08020 40 / 0.006 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10025008 [exp] 119 / 1e-30 AT5G08020 64 / 9e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10036312 [exp] 115 / 6e-29 AT5G08020 67 / 3e-11 ARABIDOPSIS THALIANA RPA70-KDA SUBUNIT B, RPA70-kDa subunit B (.1) Lus10017803 [exp] 105 / 4e-26 ND / Lus10003025 [exp] 100 / 9e-24 AT5G61000 57 / 2e-08 Replication factor-A protein 1-related (.1) Lus10027612 [exp] 96 / 4e-22 AT1G52950 49 / 1e-05 Nucleic acid-binding, OB-fold-like protein (.1) Lus10034056 [exp] 84 / 4e-18 AT4G19130 47 / 4e-05 Replication factor-A protein 1-related (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.003G004401 [exp] 42 / 0.0002 AT1G52950 50 / 9e-07 Nucleic acid-binding, OB-fold-like protein (.1)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020633 pacid=23172347 polypeptide=Lus10020633 locus=Lus10020633.g ID=Lus10020633.BGIv1.0 annot-version=v1.0 ATGGCTTCCGTTCTCTTGCATGGTTTCAACCCCTATAATCTTGCCATCGAACTTCACCTCCGCTTGCTCCTGGCATGGCACATGGGAGATCCTTCACAGC CTCATAGGAGTTTTGACTTCGACACTCATTGGATTGACGAAAAGGTTGTCGGTGGCGGTCAGCCAGATCATGTGCAGCGTCACACCATTGTTGTGCGCGT CCAGAAGTTAATTGTTGCTAATGAAAGGGGAGTTGAGATTCAGGTCTCCCTTTGGGGTGACCCCACACAAATCGTAGATGCTTCGGCGAGTGTTGCCAAT GACATCTCATCTCCGACCATTGTTGCATTCTCTGCTTTCCGCATCTCATTGTTTATAGATTCAATTGTTGAGGCAACATTTGTTCTGCTTGGCGCAACGA CGAATAGAATTCTTCCCATTCCAGCTGCTCAATTAGTCCATGCCTATCCCAATGACATGGGAAGATTCCAGCCAACAATTGAAATTTTGTTGGGCCAGAC TGTGGAGTTCAAGGTTCAACTACCAAAGTTTACCTACTCAAACCGTTTTGGAGATTTTACAATCTGTAATATCTCGGGTTTGGTTGTTCATCGCGCTCAA CTCGCTGCACAGCTCCCTGCTCCAATCACAGTTAGGCCATTGAGCCCGCCAAGTACTCATACCACACCTCTACCTGGTGATCCTGCATATATTGCTCTTG TGCCAACATATGTTCCATCGTCTGCAACTCCACCCGAGCCTTCTACGGAATCTGTTTCCCCCATCATGGTGCCCTCAAGCAAATCATGA
AA sequence Show only first row Show all	>Lus10020633 pacid=23172347 polypeptide=Lus10020633 locus=Lus10020633.g ID=Lus10020633.BGIv1.0 annot-version=v1.0 MASVLLHGFNPYNLAIELHLRLLLAWHMGDPSQPHRSFDFDTHWIDEKVVGGGQPDHVQRHTIVVRVQKLIVANERGVEIQVSLWGDPTQIVDASASVAN DISSPTIVAFSAFRISLFIDSIVEATFVLLGATTNRILPIPAAQLVHAYPNDMGRFQPTIEILLGQTVEFKVQLPKFTYSNRFGDFTICNISGLVVHRAQ LAAQLPAPITVRPLSPPSTHTTPLPGDPAYIALVPTYVPSSATPPEPSTESVSPIMVPSSKS

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020633 [exp]	0	1
AT3G07040		RPS3, RPM1	RESISTANCE TO PSEUDOMONAS SYRI...		Lus10003094 [exp]	2.2	0.7186
AT2G39530			Uncharacterised protein family...		Lus10031305 [exp]	3.2	0.7624
					Lus10000914 [exp]	4.5	0.7624
AT3G04290		ATLTL1, LTL1	Li-tolerant lipase 1 (.1)		Lus10036966 [exp]	5.7	0.7559
AT4G25350		SHB1	SHORT HYPOCOTYL UNDER BLUE1, E...		Lus10037146 [exp]	7.2	0.7492
AT5G59700			Protein kinase superfamily pro...		Lus10023324 [exp]	8.8	0.6843
					Lus10004437 [exp]	19.6	0.6343
AT2G24370			Protein kinase protein with ad...		Lus10027593 [exp]	20.8	0.6343
AT5G02910			F-box/RNI-like superfamily pro...		Lus10000727 [exp]	21.9	0.6343
AT3G18170			Glycosyltransferase family 61 ...		Lus10032454 [exp]	23.0	0.6343

Compare expression of checked genes

Lus10020633 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.