Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004852 [exp] 147 / 8e-42 AT1G13570 147 / 6e-39 F-box/RNI-like superfamily protein (.1) Lus10026712 [exp] 126 / 7e-36 AT3G44590 97 / 2e-25 60S acidic ribosomal protein family (.1.2) Lus10020638 [exp] 116 / 4e-33 AT1G13570 37 / 0.002 F-box/RNI-like superfamily protein (.1) Lus10004849 [exp] 119 / 6e-33 ND 41 / 6e-04 Lus10011048 [exp] 72 / 8e-15 AT1G13570 127 / 2e-32 F-box/RNI-like superfamily protein (.1) Lus10003016 [exp] 70 / 4e-14 AT1G13570 81 / 1e-16 F-box/RNI-like superfamily protein (.1) Lus10004851 [exp] 63 / 2e-11 AT1G13570 139 / 7e-37 F-box/RNI-like superfamily protein (.1) Lus10015828 [exp] 54 / 4e-09 ND / Lus10004853 [exp] 54 / 1e-08 ND /
Poplar homologues Show only best Show top 10	No hit found
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0271 [flax] [poplar] F-box PF00646 [flax] [poplar] F-box F-box domain
Representative CDS sequence Show only first row Show all	>Lus10020637 pacid=23172366 polypeptide=Lus10020637 locus=Lus10020637.g ID=Lus10020637.BGIv1.0 annot-version=v1.0 ATGGATGGTGGTGGTTTGGAAGACAGAATCAGTAGCTTACCAGTCGAGATTCGAGAGCTTATCCTGCAATTCATACCGTTAAAAGATGCAGGTAAAGCCA GCCTCATATCGTCTAATTGGAGCAACTTGTGGGTGAATCTCTCAACTCTCAGGTTGGATGAAAAGTTTGAAAGTAAACACGAAGCTGATGAAATGAACAA ACTAATACTCGATATATGCACAGTTCTATTTCTATGTCTGAATCTTGAACGAGGTATTGACCAAGCTAATGATTTGGGACCGTTGGAGATGCTCAGGCAT ATGATTTTCCTCGATGTGTGTTTGAGCAGACAAAGCCTTGTTGATACTCTTGTCCTTATGGTTACGAGTTTGCCTAATCTGCAACGACTTGAAATTACTA TACAGGACGTTCCTGGGACTTTGGCGCCGAATATAAGTTTTCATGGAGGACCATCCGAGTTTGAGCTTAGTCTATTGGAGAGAGTTGAAGTGAAGAAGCT GATGGGTGCGGAAAATGAACTGGCTTTCGTAAAATGGTTGCTGAGTTCCTCTCCTGCGTTTGACGTCATCAAAATCGAGCTGTACTCGAATTATCAGAAC TGA
AA sequence Show only first row Show all	>Lus10020637 pacid=23172366 polypeptide=Lus10020637 locus=Lus10020637.g ID=Lus10020637.BGIv1.0 annot-version=v1.0 MDGGGLEDRISSLPVEIRELILQFIPLKDAGKASLISSNWSNLWVNLSTLRLDEKFESKHEADEMNKLILDICTVLFLCLNLERGIDQANDLGPLEMLRH MIFLDVCLSRQSLVDTLVLMVTSLPNLQRLEITIQDVPGTLAPNISFHGGPSEFELSLLERVEVKKLMGAENELAFVKWLLSSSPAFDVIKIELYSNYQN

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G58940			F-box/RNI-like superfamily pro...		Lus10020637 [exp]	0	1

Compare expression of checked genes

Lus10020637 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.