Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G24500 44 / 6e-05 hydroxyproline-rich glycoprotein family protein (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004850 [exp] 413 / 2e-145 AT4G24500 52 / 2e-07 hydroxyproline-rich glycoprotein family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.002G111500 [exp] 112 / 2e-28 AT4G24500 75 / 4e-15 hydroxyproline-rich glycoprotein family protein (.1.2.3) Potri.005G153300 [exp] 101 / 2e-24 AT4G24500 61 / 2e-10 hydroxyproline-rich glycoprotein family protein (.1.2.3)
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020639 pacid=23172375 polypeptide=Lus10020639 locus=Lus10020639.g ID=Lus10020639.BGIv1.0 annot-version=v1.0 ATGGAGGAGAATTCGGAGAGCAGAAGCGATAGATTGAAAGCAATGCGGGCTGTGGCGGCCGATGCTGCTTCCAGTGGTCTCCCTGCGATTCCTGGAGTGC TAGCTAATCCAATGTTGGATGGGCCTTCAGAAACTGAGACTAGGGGTGGCGGTGGTGATCCACGGTTTGATTTCTACACTGATCCTATGGCTGCCTTTTC CAGTACTAGGAATAGGAATCCTCCTCTTCACAACACTCCTAGTAACTTCATTCCTCCAGCCGGAAGATTGCCTCCTCCTCCAGCTTGGAATCCTCCTTCT CCTTCCCCAGGACCATGGAATCCGGCCCCGAGATCAACACCTCCACATATGCAAGGCCATTATCATCCAGTTAATCAAGGTATGTATCAAGGTAACAGAC CATACGGGAGCCAAGGTGGCATTAGAAGCCCGTTCCCATTTAATCAACGAGCTCCTCATCCGCAACGATGGAGTGAATTTGCCAATCCAGCTTCAAATTA TGGCTCGCATCCTCGTGGAGGAATGCCTGGTGTGGGACCTAGGTATCATCAGGGAAACCCGAACTATGCACCAGCAAGAAGCCCTAGTGTCAATCATCAT CCTAATTCAGGTTATGGACGTCATCAATTTCCCAGTTCAGGCCGAGGCAACAGGAGCTCGGTCTGTGGACGTGGCAGTGGGAGAGGGAGAAGTTTTCACA ATCATGGTTCTACATCCAGTGAAAAACAAGACCCGTGGAAATTCTATCACGAATCCATGGTGGAAGAGCCATGGGAGGGTTTAGAACCGATTGAATGGAG AGGAATCACAGCTGGGTCTCCCGATTCCTGGATGCCGAGTTCCATTAGCATGAAAAGGCCGCGGGGAGGACCGATGTCATCTTTTAATCGGTCATCGAAT TCTGGACAGAGCCTTGCGGACTACCTTGCTTCCTCATTTAACGAAGCCTCCAACGCTGAGCAGAACACTTGA
AA sequence Show only first row Show all	>Lus10020639 pacid=23172375 polypeptide=Lus10020639 locus=Lus10020639.g ID=Lus10020639.BGIv1.0 annot-version=v1.0 MEENSESRSDRLKAMRAVAADAASSGLPAIPGVLANPMLDGPSETETRGGGGDPRFDFYTDPMAAFSSTRNRNPPLHNTPSNFIPPAGRLPPPPAWNPPS PSPGPWNPAPRSTPPHMQGHYHPVNQGMYQGNRPYGSQGGIRSPFPFNQRAPHPQRWSEFANPASNYGSHPRGGMPGVGPRYHQGNPNYAPARSPSVNHH PNSGYGRHQFPSSGRGNRSSVCGRGSGRGRSFHNHGSTSSEKQDPWKFYHESMVEEPWEGLEPIEWRGITAGSPDSWMPSSISMKRPRGGPMSSFNRSSN SGQSLADYLASSFNEASNAEQNT

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G24500			hydroxyproline-rich glycoprote...		Lus10020639 [exp]	0	1
AT4G31160		DCAF1	DDB1-CUL4 associated factor 1 ...		Lus10006376 [exp]	3.5	0.8014
AT2G20330			Transducin/WD40 repeat-like su...		Lus10022855 [exp]	3.7	0.8000
AT4G01000			Ubiquitin-like superfamily pro...		Lus10010125 [exp]	8.1	0.8111
AT3G56860		UBA2A	UBP1-associated protein 2A (.1...		Lus10043016 [exp]	10.1	0.8424
AT3G13224			RNA-binding (RRM/RBD/RNP motif...		Lus10032595 [exp]	10.5	0.7781
AT3G22520			unknown protein		Lus10006124 [exp]	13.0	0.7949
AT5G14170		CHC1	SWIB/MDM2 domain superfamily p...		Lus10032049 [exp]	17.0	0.8044
AT5G52530			dentin sialophosphoprotein-rel...		Lus10038838 [exp]	17.7	0.7963
AT1G36990			unknown protein		Lus10003744 [exp]	20.1	0.7682
AT3G16620		ATTOC120	ARABIDOPSIS THALIANA TRANSLOCO...		Lus10005063 [exp]	24.3	0.7858

Compare expression of checked genes

Lus10020639 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.