Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	No hit found
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10025720 [exp] 42 / 5e-05 ND / Lus10035750 [exp] 42 / 6e-05 AT1G51640 177 / 4e-51 exocyst subunit exo70 family protein G2 (.1)
Poplar homologues Show only best Show top 10	No hit found
PFAM info
Representative CDS sequence Show only first row Show all	>Lus10020641 pacid=23172386 polypeptide=Lus10020641 locus=Lus10020641.g ID=Lus10020641.BGIv1.0 annot-version=v1.0 ATGACGGTTACCCTCTCTTCATTAGAGAGTCTTTACCGCTACCGTCCTCTTCCGGCGACTTCCATCGCCCCGCTCCCCTGTACGGTCGCATCCTTGGCCT TTACAGATACATACTCCTCTCCTTCTTGCTTGCTTTTTGGTTCGGTCCATCTACTCTTGCATTGTTTAGTGTGCATATGGATTTTCCAGAGATTGGCTAT CAAGGATGTGGTAGCACTTCAAAACACTCGGATCATCATTTCCATCGATATAGTGCTCGACGATTGTGTCCGGATAGCGGTTGGAGGTTCGATTGTCGGA GAGAGATATCAGTTGCTCTCGTCCCTCCCAGGGATCCGGCTACAGACGGCGGTCAGGGATCTGGTTGTAGATGGTTCGACGGTTAGGTGGATATTGAGGA TGATGCGGAAGGAGTGGTGGCAGACATTCGAACGGGCCGTGTTAGATTGGCGGCCGGTGAATTCATAA
AA sequence Show only first row Show all	>Lus10020641 pacid=23172386 polypeptide=Lus10020641 locus=Lus10020641.g ID=Lus10020641.BGIv1.0 annot-version=v1.0 MTVTLSSLESLYRYRPLPATSIAPLPCTVASLAFTDTYSSPSCLLFGSVHLLLHCLVCIWIFQRLAIKDVVALQNTRIIISIDIVLDDCVRIAVGGSIVG ERYQLLSSLPGIRLQTAVRDLVVDGSTVRWILRMMRKEWWQTFERAVLDWRPVNS

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
					Lus10020641 [exp]	0	1
AT5G47670	CCAAT	NF-YB6, L1L	"nuclear factor Y, subunit B6"...		Lus10001914 [exp]	1.0	0.9921
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10022114 [exp]	2.4	0.9764
AT1G17960			Threonyl-tRNA synthetase (.1)		Lus10030644 [exp]	3.9	0.9742
AT5G53390			O-acyltransferase (WSD1-like) ...		Lus10039843 [exp]	4.5	0.9738
AT3G59010		PME61, PME35	pectin methylesterase 61 (.1)		Lus10025510 [exp]	4.7	0.9565
AT4G16740		ATTPS03	terpene synthase 03 (.1.2)		Lus10039713 [exp]	5.0	0.9721
AT5G25610		ATRD22, RD22	RESPONSIVE TO DESSICATION 22, ...		Lus10007674 [exp]	5.5	0.9568
AT2G30300			Major facilitator superfamily ...		Lus10026422 [exp]	5.9	0.9637
AT3G04720		HEL, PR-4, PR4	HEVEIN-LIKE, pathogenesis-rela...		Lus10006244 [exp]	6.9	0.9643
AT5G57800		CER3, FLP1, YRE...	FACELESS POLLEN 1, ECERIFERUM ...		Lus10008895 [exp]	6.9	0.9591

Compare expression of checked genes

Lus10020641 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.