Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT2G27385 108 / 2e-30 Pollen Ole e 1 allergen and extensin family protein (.1.2.3) AT5G22430 105 / 9e-29 Pollen Ole e 1 allergen and extensin family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10004847 [exp] 248 / 6e-85 AT2G27385 135 / 1e-40 Pollen Ole e 1 allergen and extensin family protein (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.009G019300 [exp] 131 / 5e-39 AT5G22430 129 / 2e-38 Pollen Ole e 1 allergen and extensin family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0287 [flax] [poplar] Transthyretin PF01190 [flax] [poplar] Pollen_Ole_e_1 Pollen protein Ole e 1 like
Representative CDS sequence Show only first row Show all	>Lus10020642 pacid=23172301 polypeptide=Lus10020642 locus=Lus10020642.g ID=Lus10020642.BGIv1.0 annot-version=v1.0 ATGGCGGTTCCACTATTACTCTTCTCCTTCGTAGCCTTGCTGGCCTTGTCCTCTCAGCAGCAGCTCGGCGTTGCGGCCAATTCCAGAGTCGTCAAAGGCA GAGTCTCCTGCGTTCACTGCAGCCCTCATTATGACTTTTCTGGTATACTGATTTCCGTCAAGTGTGACGGCGACAGAAAGCTGGCCATAACAGGAACAGA AAAGGATGGATCTTTCCAAGCAGAGCTTCCTTCAGCAACTTCTCAAAATTGCCTGGCTAAGCTTCTAGGTGGACAAACCAAGCTCTACGCTTCAAGGGCA AACTTGGTCTCCAAGATTGTGAAGTCATCCACCACCACCACTACTGACACTGATTCCTACACAATCTCAACTCCTCTGGCTTTCTCCACCGCCTGCCCGC TGGGGAAGGCGAGCTACTGCAGTGGTCGAAACGGGCTTGGTTCGTCGAAGACCGTCGACCTTCCGATCCCCAAGGAGTGGGGACTTGCTCCTACTAGCTA CTACATCAACCCTTTCGTCCCCATTATTGGGATCCCTTGA
AA sequence Show only first row Show all	>Lus10020642 pacid=23172301 polypeptide=Lus10020642 locus=Lus10020642.g ID=Lus10020642.BGIv1.0 annot-version=v1.0 MAVPLLLFSFVALLALSSQQQLGVAANSRVVKGRVSCVHCSPHYDFSGILISVKCDGDRKLAITGTEKDGSFQAELPSATSQNCLAKLLGGQTKLYASRA NLVSKIVKSSTTTTTDTDSYTISTPLAFSTACPLGKASYCSGRNGLGSSKTVDLPIPKEWGLAPTSYYINPFVPIIGIP

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10020642 [exp]	0	1
AT2G27385			Pollen Ole e 1 allergen and ex...		Lus10004847 [exp]	1.0	0.9803
AT1G63260		TET10	tetraspanin10 (.1.2.3)		Lus10029562 [exp]	1.7	0.9280
AT1G11000		ATMLO4, MLO4	MILDEW RESISTANCE LOCUS O 4, S...		Lus10041893 [exp]	2.0	0.9267
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10015883 [exp]	3.2	0.9365
AT3G19184	B3		AP2/B3-like transcriptional fa...		Lus10014043 [exp]	3.2	0.9185
AT5G62360			Plant invertase/pectin methyle...		Lus10031711 [exp]	5.7	0.8900
AT1G02205		CER1	ECERIFERUM 1, Fatty acid hydro...		Lus10011473 [exp]	6.0	0.9003
AT2G24800			Peroxidase superfamily protein...		Lus10026903 [exp]	6.7	0.9069
AT4G00165			Bifunctional inhibitor/lipid-t...		Lus10009282 [exp]	6.9	0.9091
AT5G15310	MYB	ATMYB16, ATMIXT...	myb domain protein 16 (.1.2)		Lus10015376 [exp]	7.7	0.9118

Compare expression of checked genes

Lus10020642 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.