Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G09090 1034 / 0 ATRBOHB-BETA, ATRBOHB respiratory burst oxidase homolog B (.1.2) AT5G47910 1011 / 0 ATRBOHD, RBOHD respiratory burst oxidase homologue D (.1) AT5G51060 981 / 0 ATRBOHC, RHD2 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) AT4G25090 917 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT1G64060 893 / 0 RBOHAP108, ATRBOHF ,ATRBOH F ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) AT5G07390 885 / 0 ATRBOHA respiratory burst oxidase homolog A (.1.2) AT4G11230 769 / 0 Riboflavin synthase-like superfamily protein (.1) AT1G19230 766 / 0 Riboflavin synthase-like superfamily protein (.1.2) AT5G60010 725 / 0 ferric reductase-like transmembrane component family protein (.1) AT3G45810 678 / 0 ferric reductase-like transmembrane component family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029896 [exp] 1385 / 0 AT1G09090 1158 / 0.0 respiratory burst oxidase homolog B (.1.2) Lus10043017 [exp] 1011 / 0 AT5G47910 1276 / 0.0 respiratory burst oxidase homologue D (.1) Lus10022434 [exp] 1004 / 0 AT5G51060 1276 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Lus10032517 [exp] 994 / 0 AT5G47910 1273 / 0.0 respiratory burst oxidase homologue D (.1) Lus10017527 [exp] 900 / 0 AT1G64060 1445 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10032308 [exp] 900 / 0 AT1G64060 1467 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10028755 [exp] 865 / 0 AT1G64060 1486 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Lus10033423 [exp] 809 / 0 AT1G19230 1165 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Lus10034890 [exp] 801 / 0 AT1G19230 1181 / 0.0 Riboflavin synthase-like superfamily protein (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G026200 [exp] 1169 / 0 AT1G09090 1165 / 0.0 respiratory burst oxidase homolog B (.1.2) Potri.003G159800 [exp] 1069 / 0 AT5G47910 1299 / 0.0 respiratory burst oxidase homologue D (.1) Potri.001G070900 [exp] 1033 / 0 AT5G47910 1227 / 0.0 respiratory burst oxidase homologue D (.1) Potri.015G109800 [exp] 1018 / 0 AT5G51060 1253 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.012G111600 [exp] 1010 / 0 AT5G51060 1255 / 0.0 ROOT HAIR DEFECTIVE 2, A. THALIANA RESPIRATORY BURST OXIDASE HOMOLOG C, NADPH/respiratory burst oxidase protein D (.1) Potri.003G133300 [exp] 919 / 0 AT1G64060 1489 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.001G098300 [exp] 905 / 0 AT1G64060 1476 / 0.0 ARABIDOPSIS THALIANA RESPIRATORY BURST OXIDASE HOMOLOG F, respiratory burst oxidase protein F (.1) Potri.006G137300 [exp] 809 / 0 AT1G19230 1203 / 0.0 Riboflavin synthase-like superfamily protein (.1.2) Potri.006G097200 [exp] 724 / 0 AT5G60010 1078 / 0.0 ferric reductase-like transmembrane component family protein (.1) Potri.016G112200 [exp] 690 / 0 AT5G60010 1052 / 0.0 ferric reductase-like transmembrane component family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0076 [flax] [poplar] FAD_Lum_binding PF08022 [flax] [poplar] FAD_binding_8 FAD-binding domain CL0220 [flax] [poplar] EF_hand PF08414 [flax] [poplar] NADPH_Ox Respiratory burst NADPH oxidase CL0091 [flax] [poplar] NAD_Ferredoxin PF08030 [flax] [poplar] NAD_binding_6 Ferric reductase NAD binding domain CL0328 [flax] [poplar] 2heme_cytochrom PF01794 [flax] [poplar] Ferric_reduct Ferric reductase like transmembrane component
Representative CDS sequence Show only first row Show all	>Lus10020644 pacid=23140932 polypeptide=Lus10020644 locus=Lus10020644.g ID=Lus10020644.BGIv1.0 annot-version=v1.0 ATGAAGGAGTCGGGAGAGTTCGCCGGCGAACTGTTCGACGCGCTGGCACGGCGGAATGGGATGACGTCGGCGATTATAAGCAAGGCGGATCTCCATGAAT TCTGGGAGCAAATTAATGACCAGAGCTTTGATGCTAGGCTACAGATTTTCTTTGACATGGTGGACAAAAATGCAGACGGTCGAATAACGGAAGAGGAGGT TAAAGAGATTATTGCTCTTAGTGCTTCTGCTAATAAGTTATCCAAGATCCAAGACAGAGCTGAAGAGTATGCAGCTTTAATCATGGAAGAACTGGACCCT GACAACTTGGGCTACATCGAGTTGTACAATTTGGAGACACTGCTCCTACAAGCACCAAGCAAATCGACCAACTTGGGAACGGAAAGCCGAGCCCTGAGCC AAATGCTGAGCCAGAAGCTGGTCCGGACCAAAGAATTCAACCCGATAAAGCGGTGGTCCCACGGGGTGGCCTACTTCGTCCAGGACAACTGGAAGAGGAT ATGGGTCATGGCATTGTGGCTAGCCATATGCGTGGGGCTGTTCGCGTGGAAGTTCGTCCAGTACAAGCGCCGCGCAGTGTTCGAAGTCATGGGCTACTGT GTCTCGGTGGCGAAAGGCGGGGCCGAGATCACCAAGTTCAACATGGCTTTGATCCTCCTGCCTGTTTGTAGGAACACTATAACGTGGCTTAGGAGTCGGA CCAAGTTGGGGAAGGCCGTGCCGTTTGATGATAACATCAATTTTCACAAGGTAGTAGCTGCCGGAATTGCAGTCGGAGTAGGCCTCCACGCGATCTCACA TCTGACGTGCGACTTCCCACGGCTGCTCCACGCCACCGACGAGGAGTACAAGCCGCTAGCCCCATTTTTCGGCGAAGAAAGGCCGAACAACTACTGGTGG TTCGTGAAAGGAACCGAAGGTTGGACGGGCGTCCTGATGGTGGTGCTCATGGCCATAGCTTACGTTCTGGCTCAGCCCTGGTTCCGTCGTAACCGTCTAA GGAACCTTCCGAAGCCATTGAAGAAGCTGACCGGGTTCAACGCGTTCTGGTACTCGCACCACTTGTTCGTCATCGTCTACGCTCTGTTCATCGTTCATGG GTACTACTTGTACCTCTCCAAGGACTGGTACAAGAAGACGACGTGGATGTACGTTGCGATTCCGATGGCGTTGTATGCTTGTGAGCGTCTTGTTCGTGCT TTCAGATCGGGTTACAAATCGGTCAAGATTCTCAAGGTGGCAGTGTATCCTGGAAATGTACTGTCTTTACAAATGGCGAAGCCTCCAGGATTCCGATATA GTAGCGGTCAATACCTGTTTGTGAATTGTGCAGCGGTTTCGCCGTTCGAGTGGCATCCATTTTCGATCACTTCCGCTCCAGGAGACGACTACCTCAGCGT GCACATCCGTACCCTAGGGGATTGGACCGGACAACTCAAATCGGTCTTCTCTAAGGTATGTCAACCACCAGCAGCAAACCAAAGCGGCCTCCTGAGATCG GACGTGTCAAGCTCTATGCCGAAGCTCCAAATCGACGGACCGTACGGAGCTCCGGCGCAGGACTACAAAGACTACGACGTCCTTCTCCTAGTCGGATTAG GAATCGGAGCAACTCCTCTGATCAGCATCGTCAAGGACGTCCTCAACAACATCAAGCACGAGAAGGACCGCCAGCTGGAATCCGGCGGCGGGGGTGGAAG GCCGTCGTTCGCGACGCAGAGAGCTTACTTCTACTGGGTGACGAGGGAGCAAGGATCGTTCGAGTGGTTCCGAGGGGTGATGAACGAAGTGGCGGAGTAC GACGAGGACAGGGTGATCGAGCTTTACAACTACTGTACGAGTGTCTACGAGGAAGGCGATGCACGGTCGGCGTTGATCACCATGCTCCAGTCGATCCAAC ACGCCAAGAGCGGTGTGGATATTGTGTCGGAGACGAGGGTGAAGACGCATTTCGCTAGGCCCGACTGGAGGAAGGTTTTCAAGCGTGTTGCTATTAACCA CCCAAACAAGAGAGTTGGAGTGTTTTATTGTGGGGCTCCAGGATTGACTGGAGAACTTAGAAAATGGGCTCAAGAGTTTTCAAGGAAGACTTCTACCAAG TTTGATTTCCACAAAGAGAATTTTTAG
AA sequence Show only first row Show all	>Lus10020644 pacid=23140932 polypeptide=Lus10020644 locus=Lus10020644.g ID=Lus10020644.BGIv1.0 annot-version=v1.0 MKESGEFAGELFDALARRNGMTSAIISKADLHEFWEQINDQSFDARLQIFFDMVDKNADGRITEEEVKEIIALSASANKLSKIQDRAEEYAALIMEELDP DNLGYIELYNLETLLLQAPSKSTNLGTESRALSQMLSQKLVRTKEFNPIKRWSHGVAYFVQDNWKRIWVMALWLAICVGLFAWKFVQYKRRAVFEVMGYC VSVAKGGAEITKFNMALILLPVCRNTITWLRSRTKLGKAVPFDDNINFHKVVAAGIAVGVGLHAISHLTCDFPRLLHATDEEYKPLAPFFGEERPNNYWW FVKGTEGWTGVLMVVLMAIAYVLAQPWFRRNRLRNLPKPLKKLTGFNAFWYSHHLFVIVYALFIVHGYYLYLSKDWYKKTTWMYVAIPMALYACERLVRA FRSGYKSVKILKVAVYPGNVLSLQMAKPPGFRYSSGQYLFVNCAAVSPFEWHPFSITSAPGDDYLSVHIRTLGDWTGQLKSVFSKVCQPPAANQSGLLRS DVSSSMPKLQIDGPYGAPAQDYKDYDVLLLVGLGIGATPLISIVKDVLNNIKHEKDRQLESGGGGGRPSFATQRAYFYWVTREQGSFEWFRGVMNEVAEY DEDRVIELYNYCTSVYEEGDARSALITMLQSIQHAKSGVDIVSETRVKTHFARPDWRKVFKRVAINHPNKRVGVFYCGAPGLTGELRKWAQEFSRKTSTK FDFHKENF

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10020644 [exp]	0	1
AT2G02010		GAD4	glutamate decarboxylase 4 (.1)		Lus10034426 [exp]	1.4	0.9930
AT5G60335			Thioesterase superfamily prote...		Lus10031971 [exp]	1.7	0.9914
AT1G72360	AP2_ERF	AtERF73, HRE1	HYPOXIA RESPONSIVE ERF \(ETHYL...		Lus10003601 [exp]	2.0	0.9917
AT2G30490		REF3, CYP73A5, ...	REDUCED EPRDERMAL FLUORESCENCE...		Lus10027598 [exp]	2.0	0.9908
AT1G09090		ATRBOHB-BETA, A...	respiratory burst oxidase homo...		Lus10029896 [exp]	3.9	0.9899
AT1G71695			Peroxidase superfamily protein...		Lus10028689 [exp]	4.6	0.9880
AT1G28480		roxy19, GRX480	Thioredoxin superfamily protei...		Lus10039867 [exp]	5.2	0.9867
AT3G19615			unknown protein		Lus10031599 [exp]	5.3	0.9844
AT5G17330		GAD1, GAD	GLUTAMATE DECARBOXYLASE 1, glu...		Lus10034425 [exp]	5.7	0.9877
AT4G01250	WRKY	ATWRKY22, WRKY2...	WRKY family transcription fact...		Lus10024676 [exp]	5.8	0.9831

Compare expression of checked genes

Lus10020644 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.