Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05480 484 / 7e-170 ATRAD9 cell cycle checkpoint control protein family (.1.2.3)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029894 [exp] 695 / 0 AT3G05480 384 / 5e-131 cell cycle checkpoint control protein family (.1.2.3)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017500 [exp] 572 / 0 AT3G05480 558 / 0.0 cell cycle checkpoint control protein family (.1.2.3)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0060 [flax] [poplar] DNA_clamp PF04139 [flax] [poplar] Rad9 Rad9
Representative CDS sequence Show only first row Show all	>Lus10020646 pacid=23140931 polypeptide=Lus10020646 locus=Lus10020646.g ID=Lus10020646.BGIv1.0 annot-version=v1.0 ATGGAGTTCAGTCTAAGCGGGAACGCTCTCAAGGCTTTTGCACGGTGCATTACTTGCCTAGGTCGTATAGGAAATGAGCTCGCAGTTGAAGCTTCTTCTT CTCAGCTGGCTTTTCACACACTGAACTCGTCGCGATCTGCTTATCAGTCGATTACGTTTAAGCCTGGATTCTTTGACGTGTATACGGTGTTTGGAACTCC GGTTAAGTTCAGCGTTCTCGTAAAGGCTGTTTGCTCCGTCCTTAGGACGCCTGTTCAGAGCATCGATCATTTAAGAGTTCAATTGGCTGATCCTGATGCC TCCAAAGTGCAGTGGACCTTGGAATGCAATAACGGTATGAGAAAAGCCTATTCGATTACTTGCAATGCTGAGCCGGATATACAACATTTGGCGCTTGACA GGAGTAGATTTCCTAGCAGCTTTATAGTTAGGCCACGTGATCTAAACAGGCTGCTTGCGAATTTTCAATCATCGCTCCAGGAGATAACCATCATAGCAAC AGAGATAAATTCCTTGCCTTCTGATGCTGAAAGTCAAATAGGTGGGAAAGCTGTTGAGCTCAGAAGCTACAAGGTATCGTATCTCATTCAAGCTGTGTTT ACTGTAGACAATGACTCCACTCTGCACACTCAATTATGGATAGATCCTACAGAAGAGTTTGTCCACTATAATCATGTTGGAGACCCCGTTGATATTACAT TTGGTGTAAAGGAACTAAAGGCATTTGTTTCTTTTTGTGAGAGCTGTGAAGTGGACATTCATTTATACTTTGAAAAGGCTGGAGAACCGATTTTAATGGC ACCAAAATTTGTCCTGTCTGATGCATCTGGTTCAAACTTTGACGCGACACTTGTTCTAGCAACCATGCTTATATCACAGCTTCATGACGATAACGCCTCT GAACCAGCACCACAAGCTGACTCAATACCAGCTCAAGCTGTAAACCGTGACCAGTTTCAAGCACAACCAGAGAGTAGTCATAGAGCAAATGTTTCTGAGC ATCCATCCGATCACACCAAAATCTGGTCCGACCTTTCAGCGAAAAGTGGTTCTGGTGCTGAAGTTAGACAAGCTCCAGGAGAAACAAATTTAAATGCGAC GGACCAGAGGCAAATTCAGAGGATCAGCACCATACAAATATCAGAAAATGTAAATGCTGGAGTTCCTGATCCCTCGAGGTATCATCAGAAAGAGAAGGGC CTTCCTGAAGAAGCACAAGATACACCTCAAGCCAATGACACTACTATCTCACAACGCCATCCGAGTAATTGGGTAGATGCAAATGAGGAAGATGATGACG ATGATCCAGATGAAAACGAAATGTGCATCCAGTCAACGCCTCCTTACTATGAATAG
AA sequence Show only first row Show all	>Lus10020646 pacid=23140931 polypeptide=Lus10020646 locus=Lus10020646.g ID=Lus10020646.BGIv1.0 annot-version=v1.0 MEFSLSGNALKAFARCITCLGRIGNELAVEASSSQLAFHTLNSSRSAYQSITFKPGFFDVYTVFGTPVKFSVLVKAVCSVLRTPVQSIDHLRVQLADPDA SKVQWTLECNNGMRKAYSITCNAEPDIQHLALDRSRFPSSFIVRPRDLNRLLANFQSSLQEITIIATEINSLPSDAESQIGGKAVELRSYKVSYLIQAVF TVDNDSTLHTQLWIDPTEEFVHYNHVGDPVDITFGVKELKAFVSFCESCEVDIHLYFEKAGEPILMAPKFVLSDASGSNFDATLVLATMLISQLHDDNAS EPAPQADSIPAQAVNRDQFQAQPESSHRANVSEHPSDHTKIWSDLSAKSGSGAEVRQAPGETNLNATDQRQIQRISTIQISENVNAGVPDPSRYHQKEKG LPEEAQDTPQANDTTISQRHPSNWVDANEEDDDDDPDENEMCIQSTPPYYE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05480		ATRAD9	cell cycle checkpoint control ...		Lus10020646 [exp]	0	1
AT1G08840		EMB2411	embryo defective 2411, DNA rep...		Lus10010991 [exp]	6.3	0.8620
AT1G75150			unknown protein		Lus10010814 [exp]	9.3	0.8716
					Lus10017515 [exp]	10.2	0.8669
AT1G67630		EMB2814, POLA2	EMBRYO DEFECTIVE 2814, DNA pol...		Lus10036982 [exp]	16.5	0.8673
AT1G04730		CTF18	CHROMOSOME TRANSMISSION FIDELI...		Lus10043134 [exp]	22.2	0.8690
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10012876 [exp]	26.8	0.8341
AT3G18524		ATMSH2, MSH2	MUTS homolog 2 (.1)		Lus10042967 [exp]	26.9	0.8577
AT1G78770		APC6	anaphase promoting complex 6 (...		Lus10030525 [exp]	31.7	0.8490
AT3G09080			Transducin/WD40 repeat-like su...		Lus10017180 [exp]	37.1	0.8451
AT1G29630			5'-3' exonuclease family prote...		Lus10011991 [exp]	38.7	0.8519

Compare expression of checked genes

Lus10020646 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.