Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT4G15800 114 / 4e-34 RALFL33 ralf-like 33 (.1) AT3G05490 99 / 7e-28 RALFL22 ralf-like 22 (.1) AT3G16570 99 / 2e-27 ATRALF23, RALFL23 ARABIDOPSIS RAPID ALKALINIZATION FACTOR 23, rapid alkalinization factor 23 (.1) AT1G02900 94 / 1e-25 RALF1, RALFL1, ATRALF1 RALF-LIKE 1, rapid alkalinization factor 1 (.1) AT4G13950 84 / 7e-22 RALFL31 ralf-like 31 (.1) AT2G33775 83 / 1e-21 RALFL19 ralf-like 19 (.1) AT1G28270 81 / 1e-20 RALFL4 ralf-like 4 (.1) AT3G23805 77 / 4e-19 RALFL24 ralf-like 24 (.1) AT5G67070 66 / 8e-15 RALFL34 ralf-like 34 (.1) AT4G14010 48 / 4e-08 RALFL32 ralf-like 32 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029893 [exp] 169 / 1e-55 AT4G15800 116 / 8e-35 ralf-like 33 (.1) Lus10015172 [exp] 120 / 2e-36 AT4G15800 107 / 2e-31 ralf-like 33 (.1) Lus10000502 [exp] 103 / 2e-29 AT4G15800 134 / 1e-41 ralf-like 33 (.1) Lus10037512 [exp] 98 / 2e-27 AT4G15800 131 / 9e-41 ralf-like 33 (.1) Lus10025444 [exp] 82 / 5e-21 AT1G28270 100 / 2e-28 ralf-like 4 (.1) Lus10015316 [exp] 82 / 5e-21 AT1G28270 100 / 7e-29 ralf-like 4 (.1) Lus10016646 [exp] 71 / 7e-17 AT4G13950 100 / 1e-28 ralf-like 31 (.1) Lus10022561 [exp] 71 / 1e-16 AT4G13950 100 / 1e-28 ralf-like 31 (.1) Lus10005541 [exp] 66 / 7e-15 AT1G28270 69 / 3e-16 ralf-like 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.008G208200 [exp] 105 / 3e-30 AT4G15800 132 / 2e-41 ralf-like 33 (.1) Potri.014G131800 [exp] 101 / 7e-29 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.013G017400 [exp] 101 / 8e-29 AT4G15800 123 / 1e-37 ralf-like 33 (.1) Potri.005G025800 [exp] 100 / 4e-28 AT4G15800 138 / 1e-43 ralf-like 33 (.1) Potri.004G044900 [exp] 93 / 2e-25 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.004G045000 [exp] 93 / 2e-25 AT1G28270 103 / 4e-30 ralf-like 4 (.1) Potri.017G059500 [exp] 76 / 1e-18 AT4G13950 96 / 2e-26 ralf-like 31 (.1) Potri.001G320700 [exp] 69 / 6e-16 AT3G23805 96 / 1e-26 ralf-like 24 (.1) Potri.014G026900 [exp] 66 / 9e-15 AT5G67070 94 / 6e-26 ralf-like 34 (.1) Potri.005G139100 [exp] 63 / 1e-13 AT5G67070 118 / 4e-35 ralf-like 34 (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05498 [flax] [poplar] RALF Rapid ALkalinization Factor (RALF)
Representative CDS sequence Show only first row Show all	>Lus10020647 pacid=23140833 polypeptide=Lus10020647 locus=Lus10020647.g ID=Lus10020647.BGIv1.0 annot-version=v1.0 ATGGCCAGCAGTAGCAATTTGATTTGTCTCATAGCGGCCATATCGCTGGCTCTGATGATGTTGGTCATCAGCTCAGCTCCGGCGGCCGCCGCTAGCGGTG GCGCCGGTGGAATGGAGAGCTGGATACCCATCAGATCTTCAGATTCAAGTGAAATGGAGTTGGTTGGTGGTGATGATGAGTTCGGGATGGAGTCAGAGAT CAGCAGGAGGATGCTTCAGCAGAACAACAAGTACATCAGCTATGGAGCTCTCCGGAGGAACACTGTGCCTTGCTCAAGGCGTGGAGCTTCTTACTACAAT TGCAGGTCTGGTGGTCAAGCTAACCCTTACACCCGTGGCTGCAGCGCCATTACCCGATGCAGACGTTGA
AA sequence Show only first row Show all	>Lus10020647 pacid=23140833 polypeptide=Lus10020647 locus=Lus10020647.g ID=Lus10020647.BGIv1.0 annot-version=v1.0 MASSSNLICLIAAISLALMMLVISSAPAAAASGGAGGMESWIPIRSSDSSEMELVGGDDEFGMESEISRRMLQQNNKYISYGALRRNTVPCSRRGASYYN CRSGGQANPYTRGCSAITRCRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT4G15800		RALFL33	ralf-like 33 (.1)		Lus10020647 [exp]	0	1
AT5G42860			unknown protein		Lus10009749 [exp]	1.0	0.8907
AT1G75950		UIP1, SKP1A, AT...	UFO INTERACTING PROTEIN 1, ARA...		Lus10013575 [exp]	2.4	0.8455
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10012351 [exp]	4.9	0.8214
AT5G16510		RGP5	reversibly glycosylated protei...		Lus10009555 [exp]	8.9	0.7961
AT1G12240		ATBETAFRUCT4, V...	VACUOLAR INVERTASE, Glycosyl h...		Lus10028922 [exp]	12.2	0.8228
AT4G14380			unknown protein		Lus10021182 [exp]	14.0	0.8127
AT5G40140			RING/U-box superfamily protein...		Lus10039470 [exp]	15.9	0.7918
AT3G46550		FLA4, SOS5	salt overly sensitive 5, fasci...		Lus10040821 [exp]	16.7	0.8106
AT5G47200		AtRABD2b, AtRab...	ARABIDOPSIS RAB GTPASE HOMOLOG...		Lus10000595 [exp]	17.0	0.7656
AT5G50460			secE/sec61-gamma protein trans...		Lus10035206 [exp]	18.3	0.7691

Compare expression of checked genes

Lus10020647 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.