Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05500 229 / 2e-75 Rubber elongation factor protein (REF) (.1) AT2G47780 125 / 2e-35 Rubber elongation factor protein (REF) (.1) AT1G67360 88 / 9e-21 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029892 [exp] 351 / 9e-124 AT3G05500 317 / 3e-110 Rubber elongation factor protein (REF) (.1) Lus10015171 [exp] 265 / 8e-90 AT3G05500 282 / 1e-96 Rubber elongation factor protein (REF) (.1) Lus10031493 [exp] 265 / 2e-88 AT3G05500 285 / 4e-96 Rubber elongation factor protein (REF) (.1) Lus10015786 [exp] 92 / 6e-21 AT1G67370 600 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1) Lus10037019 [exp] 84 / 4e-18 AT1G67370 621 / 0.0 ASYNAPTIC 1, DNA-binding HORMA family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G025700 [exp] 254 / 2e-85 AT3G05500 277 / 1e-94 Rubber elongation factor protein (REF) (.1) Potri.013G017300 [exp] 253 / 3e-85 AT3G05500 258 / 6e-87 Rubber elongation factor protein (REF) (.1) Potri.002G206000 [exp] 188 / 1e-59 AT3G05500 238 / 4e-79 Rubber elongation factor protein (REF) (.1) Potri.001G055300 [exp] 99 / 6e-25 AT1G67360 249 / 1e-83 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2) Potri.003G173100 [exp] 90 / 1e-21 AT1G67360 239 / 7e-80 Rubber elongation factor protein (REF) (.1), Rubber elongation factor protein (REF) (.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF05755 [flax] [poplar] REF Rubber elongation factor protein (REF)
Representative CDS sequence Show only first row Show all	>Lus10020648 pacid=23140895 polypeptide=Lus10020648 locus=Lus10020648.g ID=Lus10020648.BGIv1.0 annot-version=v1.0 ATGGCTGATGGAAACCCTAGCCCCCCTGCCTCTACCCCACTGACCAAGGAGGAAGAGGAGAGACTGAAGTACCTGGAGTTCGTGCAAGCGGCAGCGGTTC ACGCTCTGGTGACGTTCACCAACCTGTACATCTACGCCAAGGATAAAGCCGGTCCGTTGAAGCCTGGTGTGGAGACCGTCGAAGGAACGGTCAAGACTGT GGTTGGCCCTGTTTACGATAAGTTCCAGGATGTTCCGATTGAAGTTCTCAAGTTCGTCGATCGTAAGGTGGACGAATCTGTTACTGGACTGGACCGCCGT GTGCCCCCAGTCGTGAAGCAAGTATCCGCTCAAGCACTCTCCGCAGCACAAGCCGCTCCTGGAGCCGCCCGTGCTGTTGCCTCCGAAGTACAGCGATCCG GTGTGAAGGATACCGTGACCGGATTGGCAAAGAACGTCTACACCAAGTATGAGCCCAAAGCTAAGGAGCTCTACATCGAGTACGAACCCAAAGCAGAACA GTGTGCTGTCTCCGCCTGGCGTAGGCTCAACCAGCTGCCGCTATTCCCGCAGGTGGCTCAAGTTGTCGTCCCTACCGCTGCATACTGGTCCGAAAGGTAC AACGAGACCGTGGTTAGCACCGCGGAGAAAGGGTACAAGGTGTCCACTTACTTGCCCTTGGTGCCTACCAAGAGGATTGCTAAAGTATTCAGTGATCCTG CGAGTGGAGCAACTCCATTGGTGTCCAACTAA
AA sequence Show only first row Show all	>Lus10020648 pacid=23140895 polypeptide=Lus10020648 locus=Lus10020648.g ID=Lus10020648.BGIv1.0 annot-version=v1.0 MADGNPSPPASTPLTKEEEERLKYLEFVQAAAVHALVTFTNLYIYAKDKAGPLKPGVETVEGTVKTVVGPVYDKFQDVPIEVLKFVDRKVDESVTGLDRR VPPVVKQVSAQALSAAQAAPGAARAVASEVQRSGVKDTVTGLAKNVYTKYEPKAKELYIEYEPKAEQCAVSAWRRLNQLPLFPQVAQVVVPTAAYWSERY NETVVSTAEKGYKVSTYLPLVPTKRIAKVFSDPASGATPLVSN

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05500			Rubber elongation factor prote...		Lus10020648 [exp]	0	1
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	1.0	0.9394
AT5G50230			Transducin/WD40 repeat-like su...		Lus10018081 [exp]	2.2	0.9165
AT5G40710	C2H2ZnF		zinc finger (C2H2 type) family...		Lus10032116 [exp]	7.5	0.8931
AT4G37830			cytochrome c oxidase-related (...		Lus10019250 [exp]	8.0	0.9245
AT3G14310		ATPME3	pectin methylesterase 3 (.1)		Lus10039314 [exp]	9.9	0.9241
AT5G48020			2-oxoglutarate (2OG) and Fe(II...		Lus10037482 [exp]	10.0	0.9187
AT3G26340			N-terminal nucleophile aminohy...		Lus10006426 [exp]	10.4	0.9146
AT3G55260		HEXO1, ATHEX2	beta-hexosaminidase 1 (.1)		Lus10030323 [exp]	12.7	0.8773
AT1G19580		GAMMACA1 ,GAMMA...	gamma carbonic anhydrase 1 (.1...		Lus10028321 [exp]	12.7	0.9077
AT5G40650		SDH2-2	succinate dehydrogenase 2-2 (....		Lus10032113 [exp]	22.6	0.9026

Compare expression of checked genes

Lus10020648 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.