Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05510 422 / 2e-144 Phospholipid/glycerol acyltransferase family protein (.1.2) AT1G78690 136 / 2e-36 Phospholipid/glycerol acyltransferase family protein (.1) AT4G30580 55 / 7e-08 LPAT1, ATS2, EMB1995 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029891 [exp] 441 / 7e-150 AT3G05510 255 / 1e-79 Phospholipid/glycerol acyltransferase family protein (.1.2) Lus10004783 [exp] 141 / 3e-38 AT1G78690 353 / 2e-123 Phospholipid/glycerol acyltransferase family protein (.1) Lus10036259 [exp] 53 / 3e-07 AT4G30580 340 / 6e-116 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Lus10022158 [exp] 52 / 9e-07 AT4G30580 331 / 5e-111 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1) Lus10004768 [exp] 40 / 0.0004 AT1G78690 99 / 5e-27 Phospholipid/glycerol acyltransferase family protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G025400 [exp] 452 / 3e-156 AT3G05510 529 / 0.0 Phospholipid/glycerol acyltransferase family protein (.1.2) Potri.011G146800 [exp] 134 / 1e-35 AT1G78690 380 / 9e-134 Phospholipid/glycerol acyltransferase family protein (.1) Potri.006G183700 [exp] 45 / 0.0001 AT4G30580 388 / 2e-134 lysophosphatidic acid acyltransferase 1, EMBRYO DEFECTIVE 1995, Phospholipid/glycerol acyltransferase family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0228 [flax] [poplar] Acyltransferase PF01553 [flax] [poplar] Acyltransferase Acyltransferase
Representative CDS sequence Show only first row Show all	>Lus10020650 pacid=23140878 polypeptide=Lus10020650 locus=Lus10020650.g ID=Lus10020650.BGIv1.0 annot-version=v1.0 ATGCTTTCCCACGCGCACACCAGGAACTCGGAGCAGCTCGTGATGGGAGTACAGAGGATCGAGAAAGTGGATCTATGGAAGACCAAGGCTCGAATACTCC AGCTCAGGCTGAGGGACCGGTTCAGAGTGGCTGGGGGGGGGGGGCCCCAACACCCCCCCGCCGGGTTTCTCTGTCTGTTGTTTTTTTTCAACCACCCCCT CACTGTGCTGTGTCGCGTGTACTCTGGTGATGACCAGACCGGGTCTGTCCGCGCCGGCCGGAGGTTTTCGCTGACGGTTACTTCTCCGAAACCGTCAGCA GGCTACTTTCCAGGTTCCGTGACTTCCGTCGCGAGTCCGTCGCGTCTCCCTCCGTTTTCTACCGCAAGAGAGGTTGTCTATAATTCCACCGCCACTCTGA GTCTGTGTAAGGAATTGAATGCGGAGGAGGAATCGGTGATCCTCCGCATGGTTCAAGCTGTGGCGGTTCCTCTATTGGGAAACATGTGCTACGTGTTCAT GAATGGCCTCAATCGCGTTCAGGTTCATGGCCTGGAGAAGTTGCACAAGGCATTGCTTGAGAGGCCTAAGGACAAGCCCCTAGTAACGGTTAGCAACCAT GTTGCTTCTGTCGATGACCCATTTGTGATTGCTTCATTGCTACCACCAAGAGTACTTTTGGATGCTCAGAACTTGAGGTGGACACTTTGCGCAAGCGATC GCTGTTTTAGGAATCCCGTCACTTCTGCATTCTTTAAGACTGTCAAAGTCTTGCCCCTCTCTCGTGGTCATGGAGTTTATCAGAAGGGTATGGACACGGC AATTGCGAAGCTGAACACTGGTGGCTGGGTTCACATCTTCCCGGAGGGTAGCCGTTCTAAGGATGGTGGGAAAACTATGGGGTCTATTAAAAGAGGTGTT GGAAGGTTGGTACTTGATGCTGATACTCTCCCCATTGTAGTCCCGTTCGTGCACACTGGAATGCAAGAGATCATGCCCGTAGGATCGAGCCTTCCGAAGA TTGGAAAGACGGTAACTGTTCTTGTCGGGGACCCCATTTATCTCGACGATCTAGCAAACACTGAACTCGAAAAGGAAGACCTCCCTAGAGGAAAGCTCTA TGATGCCGTTGCCAGTAGGATCAGTGACCGATTGCTGAAAATGAAGGCCACGGTAGAACAGCTAGCCTTACACCAGTCTTCTCCAGAATTGTTGCAGCAA CAACTAGACTTGGAGGATCCATATGCTCGGCTAGAGTCTGCTAAAGATCACGAATATGGCAAGTCAACACTGAGCAATAGTGCTGCACAGGAGTTGAGAT ATGGAACCTCCTCTTTCGTGAGCAGAGTTTCTTCGAGAATGGCTGCTTGCTGGGACTCCACCGAGCTCGTGGGTTTCGCGGCCAGAGGTCTGTTCTCGAG CATTGAACCCAAGGTAGTTGTTGATAGTGTGTCGGTTGGAGGCCCGAGTCCGTTAAGAGCCTGGAGACAGTATTTGGAAGGCAACTTGCAGCAGCAACGT ATGGTTACTTGCTAG
AA sequence Show only first row Show all	>Lus10020650 pacid=23140878 polypeptide=Lus10020650 locus=Lus10020650.g ID=Lus10020650.BGIv1.0 annot-version=v1.0 MLSHAHTRNSEQLVMGVQRIEKVDLWKTKARILQLRLRDRFRVAGGGGPQHPPAGFLCLLFFFNHPLTVLCRVYSGDDQTGSVRAGRRFSLTVTSPKPSA GYFPGSVTSVASPSRLPPFSTAREVVYNSTATLSLCKELNAEEESVILRMVQAVAVPLLGNMCYVFMNGLNRVQVHGLEKLHKALLERPKDKPLVTVSNH VASVDDPFVIASLLPPRVLLDAQNLRWTLCASDRCFRNPVTSAFFKTVKVLPLSRGHGVYQKGMDTAIAKLNTGGWVHIFPEGSRSKDGGKTMGSIKRGV GRLVLDADTLPIVVPFVHTGMQEIMPVGSSLPKIGKTVTVLVGDPIYLDDLANTELEKEDLPRGKLYDAVASRISDRLLKMKATVEQLALHQSSPELLQQ QLDLEDPYARLESAKDHEYGKSTLSNSAAQELRYGTSSFVSRVSSRMAACWDSTELVGFAARGLFSSIEPKVVVDSVSVGGPSPLRAWRQYLEGNLQQQR MVTC

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05510			Phospholipid/glycerol acyltran...		Lus10020650 [exp]	0	1
AT4G34740		CIA1, ATASE2, A...	CHLOROPLAST IMPORT APPARATUS 1...		Lus10042058 [exp]	2.2	0.9169
AT1G79150			binding (.1)		Lus10034234 [exp]	4.0	0.9137
AT1G05055		ATGTF2H2, GTF2H...	general transcription factor I...		Lus10016248 [exp]	4.0	0.8994
AT1G16610		RNPS1, SR45	arginine/serine-rich 45 (.1.2....		Lus10031212 [exp]	15.0	0.9075
AT2G25580			Tetratricopeptide repeat (TPR)...		Lus10041867 [exp]	15.9	0.8781
AT2G46900			unknown protein		Lus10036338 [exp]	17.8	0.8485
AT4G11610		NTRB, ATNTRB	C2 calcium/lipid-binding plant...		Lus10031816 [exp]	25.8	0.8820
AT4G11420		ATTIF3A1, ATEIF...	eukaryotic translation initiat...		Lus10015204 [exp]	26.6	0.8919
AT5G40200		DEGP9	DegP protease 9 (.1)		Lus10014524 [exp]	32.4	0.8780
AT5G16750		TOZ	TORMOZEMBRYO DEFECTIVE, Transd...		Lus10001301 [exp]	34.1	0.8862

Compare expression of checked genes

Lus10020650 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.