Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05520 367 / 9e-129 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029890 [exp] 495 / 4e-179 AT3G05520 382 / 7e-134 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G017000 [exp] 430 / 1e-153 AT3G05520 471 / 4e-169 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2) Potri.005G025300 [exp] 416 / 4e-148 AT3G05520 471 / 3e-169 Subunits of heterodimeric actin filament capping protein Capz superfamily (.1.2)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description PF01267 [flax] [poplar] F-actin_cap_A F-actin capping protein alpha subunit
Representative CDS sequence Show only first row Show all	>Lus10020651 pacid=23140963 polypeptide=Lus10020651 locus=Lus10020651.g ID=Lus10020651.BGIv1.0 annot-version=v1.0 ATGGCGGAAGAGGAGTGCGAGATGAGCGAGGAGCAGAAGAAAGAGATCGCGAAATGGTTCCTTCTCAACTCTCCTTCCGGCGAAATCCAGTACATCGCCA AAGATTTGAAATCGGTCTTGAATGACGATAAGGTGTATGATGAGGCTACCTTGGAGGCGTTTCCTATGTATAATAAGTCTCACTTGATTTGTCTCGAGCT TCCCTGCCGAAGCGGCGACGTGCTGATCACACCTTATAATGAGTTGGAGGAGAATCAGTTCATTGAGCCTCGGACTGCACAGGTTGTGACAGTAGATCAT GTGAAGCAAGCTTGTACAGAGGTGCGACCTGCAGCTGACGAGGAACTTCCTTCACCTTACATCGAGGAATTCCGTTATGCTGTGGATGGAGAAATTCTGA AATATGTCGAAGAAGCTTATCCAAAAGGTGTCTGCTCTGTCTTCTGTACCGATGGCAAAGATGCCGAGGAACCAGGAAGTAATTTTGAGTTTGTTGTAGT CATATCCGCTGCAAGAAATAGCCCCAAGAATTTCTGCAACGGAAGTTGGCGGTCTGTGTGGAACATAAAGTTCAAAGAAGATGTACAAGTACTTGAAATC AAAGGAAAATTGCAGGTTGATGCTCACTATTTCGAGGAGGGGAATGTTCAGTTGGATGCCGAACAGGAATGCAAGGATGCAACAATCTTTCAGGCACCTG AGGATTGCGCAATTTCGATAGCCAACATTATTCGTCACCACGAGGCAGAGTACATGGGATCCCTTGAGGTTCTAAGCTCTATCTACTTTAGTTCCTTCGA ATGA
AA sequence Show only first row Show all	>Lus10020651 pacid=23140963 polypeptide=Lus10020651 locus=Lus10020651.g ID=Lus10020651.BGIv1.0 annot-version=v1.0 MAEEECEMSEEQKKEIAKWFLLNSPSGEIQYIAKDLKSVLNDDKVYDEATLEAFPMYNKSHLICLELPCRSGDVLITPYNELEENQFIEPRTAQVVTVDH VKQACTEVRPAADEELPSPYIEEFRYAVDGEILKYVEEAYPKGVCSVFCTDGKDAEEPGSNFEFVVVISAARNSPKNFCNGSWRSVWNIKFKEDVQVLEI KGKLQVDAHYFEEGNVQLDAEQECKDATIFQAPEDCAISIANIIRHHEAEYMGSLEVLSSIYFSSFE

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05520			Subunits of heterodimeric acti...		Lus10020651 [exp]	0	1
AT4G08685		SAH7	Pollen Ole e 1 allergen and ex...		Lus10042201 [exp]	5.5	0.8256
AT5G63640			ENTH/VHS/GAT family protein (....		Lus10022667 [exp]	6.0	0.7900
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10006783 [exp]	8.7	0.7961
AT3G05100			S-adenosyl-L-methionine-depend...		Lus10004147 [exp]	9.5	0.7849
AT5G07720			Galactosyl transferase GMA12/M...		Lus10000563 [exp]	10.5	0.8133
AT1G75760			ER lumen protein retaining rec...		Lus10021097 [exp]	15.1	0.7756
AT3G07210			unknown protein		Lus10025908 [exp]	15.2	0.8234
AT2G04780		FLA7	FASCICLIN-like arabinoogalacta...		Lus10002273 [exp]	16.5	0.7872
AT1G09160			Protein phosphatase 2C family ...		Lus10020666 [exp]	17.0	0.7417
AT5G09810		ACT2/7, ACT7	actin 7 (.1)		Lus10005820 [exp]	17.0	0.7807

Compare expression of checked genes

Lus10020651 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.