Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G16860 345 / 6e-107 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G68930 329 / 9e-102 pentatricopeptide (PPR) repeat-containing protein (.1) AT2G22070 325 / 6e-100 pentatricopeptide (PPR) repeat-containing protein (.1) AT3G12770 319 / 1e-98 MEF22 mitochondrial editing factor 22 (.1) AT2G13600 313 / 3e-96 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G23330 306 / 2e-93 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT3G15130 302 / 3e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G27110 302 / 3e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT1G11290 305 / 4e-92 CRR22 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT4G39530 305 / 5e-92 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029888 [exp] 1149 / 0 AT5G16860 353 / 2e-111 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10016425 [exp] 341 / 7e-106 AT2G22070 1002 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10022890 [exp] 323 / 4e-99 AT3G61170 865 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030581 [exp] 331 / 1e-98 AT1G68930 910 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10000213 [exp] 316 / 2e-97 AT2G13600 435 / 8e-144 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10024936 [exp] 318 / 5e-97 AT3G61170 855 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10030908 [exp] 326 / 8e-97 AT1G68930 928 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Lus10017446 [exp] 317 / 3e-96 AT1G11290 1152 / 0.0 CHLORORESPIRATORY REDUCTION22, Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10018978 [exp] 310 / 4e-92 AT4G13650 1258 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.010G136200 [exp] 352 / 3e-110 AT1G68930 997 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.018G067500 [exp] 347 / 6e-106 AT4G13650 590 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.007G085500 [exp] 336 / 5e-104 AT2G22070 1088 / 0.0 pentatricopeptide (PPR) repeat-containing protein (.1) Potri.012G041200 [exp] 335 / 4e-103 AT5G16860 1083 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.002G155100 [exp] 333 / 9e-103 AT3G61170 933 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.013G152000 [exp] 320 / 2e-98 AT3G12770 931 / 0.0 mitochondrial editing factor 22 (.1) Potri.012G018800 [exp] 321 / 1e-97 AT2G13600 463 / 3e-152 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.017G091600 [exp] 316 / 2e-97 AT4G37170 924 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Potri.006G245300 [exp] 319 / 5e-97 AT3G22690 570 / 0.0 unknown protein Potri.019G074700 [exp] 312 / 2e-95 AT1G71490 878 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020652 pacid=23140818 polypeptide=Lus10020652 locus=Lus10020652.g ID=Lus10020652.BGIv1.0 annot-version=v1.0 ATGGACGACGTCGGCGAGATCCAGTCACCTGTTTCATCCTCTCCGTCCGACGGAAGAATCTCCGTTGCCGTCGACGACGCCGCCGCCGATGCGGCCGCTG TTCTCACCCTCCCTCCCCCTTCCTCCCCGAAAGAGCCTGCTCCTGACGCTAGCAATGCTCTCGCTCGGACGAACAACACCGGCGGAGGAGGAGGAGGAGG AGGAGGAGGAAGAGAGGACTGTTGGAGCGAAGGAGCGACGGCGGTGTTGATAGAGGCGTGGGGGGAGAGGCACGTGGAGCTGAGCAGAGGCAATTTGAAG CACAACCACTGGAAGGAAGTCGCCGACATCGTCGCCAGCCGCGAAGGCTGGGCCAAACCGCCCAAGACCGACATTCAGTGCAAAAATCGGATCGACACCG TGAAGAAGAAGTACAAATCCGAGAGAGCCAAAATCGACGCCGGCAACGGTCCTAGCAAGATGCCTTTGCAGCAGCGTCGCTGGTACCAACATCATCCTGT AGCATTTGGCCAGGTTAAACCGGAAGCCTTTCATGCTCGGGCTGTTAAAGGCGGTCCCTTGTGTTGCAATCTCGATGCTTCGTGCAACTATCTTCTGAAA CTGTACTCCATGTATGCTGATTTGAATGATGCACGCAAGTTGTTCTACGAGATTCTTAACAAGGACGTGCGGACATGGACTATTCTGATATCCAGTTTTG CTCGAAATGGAGCAGACTCGGCTGTTTTGAATCTCTGTCGGAATATGCAAGTGGATGGTGTTAAACCAAATCAGTTCACTTTATCAGCTGTTTTGAAGTC ATGCTCTAGCTTGTATGAGCTGAAGAGCGGGAAAGCTGTCCATGGTTGGATATGGAGAAACGAGATCGCCTTCGATGTTGTGCTGGAGAACTCTGTCCTT GATCTTTATGTTAAATGCAGGGCTTTGAGCTCTGCTGAGAAGTTGTTTGGGAAAATGGAGGATAAAGATACGGTTTCGTGGAATATAATGATGGGTGCAT ATCTGCATCTTGGCGATACAAGAAAGTCGCTTGAGTTCTTCGATAGTATGAAGTCGAAAGATGTTGTGAGCTGGAACACCATGATCGATGGGCTAATCAG CTGTGACTGTGGAACCGCTGCCTTGGAAGTGCTTTATAGGATGGTCGCTGATGGACCCAATTTCAATGCAGTAACTTTCTCTACGGCATTGAATTTAGTT TCCTGCTTATCTGTTTTACAGCCTGGAAAGGAAATTCATGGGATGGTTATCAGGCTTCGGTTACATAATCAGGGCTTCATAATGAGTTCGCTTGTAGATA TGTATTGTAAATGTGGGGAGATGAGATTGGCTGCCACCATTTTTGACAAAATGTGTTTGAAATCTCCAGCAAGGAGATTCTCCTGGAGTTCTATGGTTTC TGGATACGTTCGAAATGGTGAGTACACTCATGCTTTCGAAACTGTGAAGTATATGTTCAAGGAAGACGACGTTGAGGTGGACATTTATACGCTCACAAGC GTCGTTTCTGGTTGTGCTGCGACTAGCAATTCGGAGGTCGGCAGACAGATCGATGCACATGTTCAGAAGGTAGGCCACAAAGTCGATCCCCATTTGGTTT CATCGTTTATTGATATGTACACCAAATGCGGTTGTTTGAACGACGCGTGGAAGAAGTTCGACGAAAGTAATTGCGACACCAATGTTGTAATCTGGACTTC TATGATATCTGGATTTGCTTTACATGGACAAGGCAAGGAGGCTGTTGAACTCTTTGAGCTCATGTTAAGAAAGGGCATTGCTCCGAATCATATTACGTTT CTTGCTGTTATGAATGCATGTAGCCATGCTGGGTTGTTTGAAGAAGGTAGCATATATTTTAAGTTAATGCAGACAGTTTACGGCTTGGAGCCGATGATTG AGCAATACACTGCTATGGTTGATCTATTCGGTCGAGCAGGTCGCTTGAACGAGGCAAAAGGATTCATCTTGGAGAACGGTATCTCACATCTGACAGTAGT CTGGAAGTCGCTTCTGTCATCTTGTAGGCTCCATAAAAATGTTGAGGTGGGGAAATGGGTGTGTGAAAGACTGATGGAATTGGAGCCGCTCGATACGAGT TGTTACGTTCTTTTGTCGAACATACTTTCTGCTGATGATCATTGGGAGGAGGCTGCCAAAGCTAGGACCTTGATGTTCCAGAGATCAGTTACCAAACTCC CTGGTCAGTCTTGGATCTAG
AA sequence Show only first row Show all	>Lus10020652 pacid=23140818 polypeptide=Lus10020652 locus=Lus10020652.g ID=Lus10020652.BGIv1.0 annot-version=v1.0 MDDVGEIQSPVSSSPSDGRISVAVDDAAADAAAVLTLPPPSSPKEPAPDASNALARTNNTGGGGGGGGGGREDCWSEGATAVLIEAWGERHVELSRGNLK HNHWKEVADIVASREGWAKPPKTDIQCKNRIDTVKKKYKSERAKIDAGNGPSKMPLQQRRWYQHHPVAFGQVKPEAFHARAVKGGPLCCNLDASCNYLLK LYSMYADLNDARKLFYEILNKDVRTWTILISSFARNGADSAVLNLCRNMQVDGVKPNQFTLSAVLKSCSSLYELKSGKAVHGWIWRNEIAFDVVLENSVL DLYVKCRALSSAEKLFGKMEDKDTVSWNIMMGAYLHLGDTRKSLEFFDSMKSKDVVSWNTMIDGLISCDCGTAALEVLYRMVADGPNFNAVTFSTALNLV SCLSVLQPGKEIHGMVIRLRLHNQGFIMSSLVDMYCKCGEMRLAATIFDKMCLKSPARRFSWSSMVSGYVRNGEYTHAFETVKYMFKEDDVEVDIYTLTS VVSGCAATSNSEVGRQIDAHVQKVGHKVDPHLVSSFIDMYTKCGCLNDAWKKFDESNCDTNVVIWTSMISGFALHGQGKEAVELFELMLRKGIAPNHITF LAVMNACSHAGLFEEGSIYFKLMQTVYGLEPMIEQYTAMVDLFGRAGRLNEAKGFILENGISHLTVVWKSLLSSCRLHKNVEVGKWVCERLMELEPLDTS CYVLLSNILSADDHWEEAAKARTLMFQRSVTKLPGQSWI

---

DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

---

Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G16860			Tetratricopeptide repeat (TPR)...		Lus10020652 [exp]	0	1
AT3G61860		ATRSP31, At-RS3...	arginine/serine-rich splicing ...		Lus10016981 [exp]	11.2	0.7415
AT1G04840			Tetratricopeptide repeat (TPR)...		Lus10020743 [exp]	16.2	0.7360
AT5G64950			Mitochondrial transcription te...		Lus10028912 [exp]	21.1	0.7351
AT4G19650			Mitochondrial transcription te...		Lus10038336 [exp]	40.9	0.7133
AT2G13600			Pentatricopeptide repeat (PPR)...		Lus10019731 [exp]	41.4	0.6906
AT5G54880			DTW domain-containing protein ...		Lus10000447 [exp]	62.4	0.6844
AT2G18790		OOP1, HY3, PHYB	OUT OF PHASE 1, phytochrome B ...		Lus10016911 [exp]	77.1	0.6576
AT4G31010			RNA-binding CRS1 / YhbY (CRM) ...		Lus10041383 [exp]	98.4	0.6430
AT5G44370		PHT4;6	phosphate transporter 4;6 (.1)		Lus10013836 [exp]	107.0	0.6652
AT3G24030			hydroxyethylthiazole kinase fa...		Lus10023688 [exp]	112.9	0.6373

Compare expression of checked genes

Lus10020652 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.