Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT5G27730 589 / 0 Protein of unknown function (DUF1624) (.1) AT5G47900 347 / 1e-115 Protein of unknown function (DUF1624)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10021514 [exp] 511 / 2e-179 AT5G27730 540 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10022615 [exp] 508 / 8e-178 AT5G27730 532 / 0.0 Protein of unknown function (DUF1624) (.1) Lus10010030 [exp] 369 / 7e-124 AT5G47900 433 / 2e-149 Protein of unknown function (DUF1624) Lus10039223 [exp] 303 / 5e-99 AT5G47900 349 / 1e-117 Protein of unknown function (DUF1624) Lus10027468 [exp] 293 / 6e-95 AT5G47900 380 / 9e-130 Protein of unknown function (DUF1624) Lus10019798 [exp] 256 / 7e-81 AT5G47900 329 / 5e-110 Protein of unknown function (DUF1624) Lus10036333 [exp] 206 / 1e-62 AT5G47900 269 / 6e-89 Protein of unknown function (DUF1624) Lus10014112 [exp] 204 / 1e-60 AT5G47900 237 / 4e-74 Protein of unknown function (DUF1624) Lus10000090 [exp] 144 / 5e-40 AT5G47900 174 / 5e-54 Protein of unknown function (DUF1624)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G016900 [exp] 669 / 0 AT5G27730 669 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.005G025200 [exp] 601 / 0 AT5G27730 595 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.006G122500 [exp] 530 / 0 AT5G27730 521 / 0.0 Protein of unknown function (DUF1624) (.1) Potri.014G123800 [exp] 367 / 8e-123 AT5G47900 442 / 1e-152 Protein of unknown function (DUF1624) Potri.001G071500 [exp] 346 / 4e-115 AT5G47900 519 / 0.0 Protein of unknown function (DUF1624) Potri.003G159200 [exp] 332 / 1e-109 AT5G47900 492 / 1e-172 Protein of unknown function (DUF1624) Potri.009G136700 [exp] 327 / 7e-108 AT5G47900 395 / 2e-135 Protein of unknown function (DUF1624) Potri.004G176400 [exp] 325 / 2e-107 AT5G47900 400 / 2e-137 Protein of unknown function (DUF1624)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0316 [flax] [poplar] Acyl_transf_3 PF07786 [flax] [poplar] DUF1624 Protein of unknown function (DUF1624)
Representative CDS sequence Show only first row Show all	>Lus10020653 pacid=23140918 polypeptide=Lus10020653 locus=Lus10020653.g ID=Lus10020653.BGIv1.0 annot-version=v1.0 ATGGCGGAGATTATGCCTGATGAGCACCGTCTGGTGGTCGCCGACAGCCATGACGTTGTTGCTCCGGCCGCCGGGGCAAAGCCCAAGAGAGTTGCTTCCC TCGACATCTTTCGAGGCCTCACAGTTGCTCTGATGGTTTTGGTAGACGATGCTGGAGGAGAGTGGCCAATGATAGGCCATGCGCCATGGAATGGCTGCAA CTTGGCTGACTTTGTGATGCCTTTCTTTCTCTTCATAGTTGGAATGGCCATTCCACTTGCTCTCAAGAGGATACCGAGTCGGGGAAAAGCTGTCAAGAAG GTGATTCTAAGAACTCTGAAGCTCCTCTTCTGGGGTCTTCTGCTACAAGGTGGATATTCCCATGCTCCTGACAAGCTCACCTACGGTGTTGACATGAAAA GATTAAGACTTTGCGGCATTCTGCAGAGAATTGCGTTTGCTTATTTCATTGTGGCACTTGTCGAGATATTTACTAAACCGAAACAGACGAAAGCTAAAGA TGTTGAAGATGATGCATCATCACCACAAGGCACACTGTCTATATTCAGGCTATATTGCTGGCACTGGCTGGTGGCAGCATGTATTCTGACTATCTACCTA GCAGTTCTGTACGGTACTTATGTCCCCGATTGGCAGTTCACTATTCGTAAGGAAGACAGTCACGATTATGGCAAGGTTTTCACTGTTGCTTGTGGAGTAC GAGGAAAACTGGATCCTCCTTGCAATGCTGTTGGCTATGTTGATAGGAAAATCCTTGGGACTGATCACATGTACCAACGTCCCGCTTGGAGGAGATCGAA GCCTTGCACTCCCAATTCCCCATACGAAGGACCCTTTCGCGACGATTCTCCACCGTGGTGTCATGCCCCGTTCGAACCTGAAGGAATCTTAAGCTCCATA TCTGCTGTTCTTTCCACTCTAATTGGAGTCCATTTCGGGCATGTTCTTGTACATTTGAAGAGCCATTCAAGCAGATTGAAGCAGTGGGGTGTTTCAGGAG CTGCTCTTCTGATTTTAGGCCTGACCCTCCATTGCACCAACGCAATTCCCTTGAACAAACAGCTATACACATTTAGCTATGTCTGTGTCACATCTGGAGC AGCAGCATTGGTCTTCTGCGCCTTCTACGTTACAGTTGATGTGCTGGTGATGAACCTGAAGCTGCTGTTTCTGCCATTTGAATGGATTGGGAAGAATGCA ATGTTTGTGTATGTGATGGCTGCTGGTGGCATTTTTGCTGGCTTTGTCAATGGATGGTACTTTCAGGATCCCCATAATAACCCGGTGTACTGGATCAAGA AGCATGTGTTCATTGGAGTATGGCATTCTGAGAGAGTAGGGATTCTGCTGTACGTTGTGTTTGCAGAAATTCTGTTCTGGGCTATTGTTGCTGGTGTTTT GGATTACCTTGGCATTTACTGGAAGCTGTAA
AA sequence Show only first row Show all	>Lus10020653 pacid=23140918 polypeptide=Lus10020653 locus=Lus10020653.g ID=Lus10020653.BGIv1.0 annot-version=v1.0 MAEIMPDEHRLVVADSHDVVAPAAGAKPKRVASLDIFRGLTVALMVLVDDAGGEWPMIGHAPWNGCNLADFVMPFFLFIVGMAIPLALKRIPSRGKAVKK VILRTLKLLFWGLLLQGGYSHAPDKLTYGVDMKRLRLCGILQRIAFAYFIVALVEIFTKPKQTKAKDVEDDASSPQGTLSIFRLYCWHWLVAACILTIYL AVLYGTYVPDWQFTIRKEDSHDYGKVFTVACGVRGKLDPPCNAVGYVDRKILGTDHMYQRPAWRRSKPCTPNSPYEGPFRDDSPPWCHAPFEPEGILSSI SAVLSTLIGVHFGHVLVHLKSHSSRLKQWGVSGAALLILGLTLHCTNAIPLNKQLYTFSYVCVTSGAAALVFCAFYVTVDVLVMNLKLLFLPFEWIGKNA MFVYVMAAGGIFAGFVNGWYFQDPHNNPVYWIKKHVFIGVWHSERVGILLYVVFAEILFWAIVAGVLDYLGIYWKL

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT5G27730			Protein of unknown function (D...		Lus10020653 [exp]	0	1
AT3G23600			alpha/beta-Hydrolases superfam...		Lus10027997 [exp]	5.7	0.8597
AT4G18975			Pentatricopeptide repeat (PPR)...		Lus10009120 [exp]	8.5	0.8553
AT1G04530		TPR4	tetratricopeptide repeat 4, Te...		Lus10000257 [exp]	9.5	0.8705
AT1G30270		PKS17, ATCIPK23...	SNF1-RELATED PROTEIN KINASE 3....		Lus10028115 [exp]	11.7	0.8664
AT1G11340			S-locus lectin protein kinase ...		Lus10013244 [exp]	12.4	0.8946
AT2G45990			unknown protein		Lus10036369 [exp]	12.7	0.8708
AT5G36930			Disease resistance protein (TI...		Lus10007828 [exp]	13.6	0.8788
AT5G07610			F-box family protein (.1)		Lus10024021 [exp]	14.3	0.8326
AT5G24270		ATSOS3, CBL4, S...	CALCINEURIN B-LIKE PROTEIN 4, ...		Lus10018108 [exp]	15.5	0.8234
AT2G32230		PRORP1	proteinaceous RNase P 1 (.1)		Lus10014928 [exp]	19.7	0.8756

Compare expression of checked genes

Lus10020653 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.