Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05545 223 / 2e-68 RING/U-box superfamily protein (.1) AT2G47700 158 / 2e-44 RFI2 RED AND FAR-RED INSENSITIVE 2, RING/U-box superfamily protein (.1) AT4G13490 89 / 3e-20 RING/U-box superfamily protein (.1) AT2G15260 78 / 1e-15 RING/U-box superfamily protein (.1) AT1G51930 40 / 0.0005 RING/U-box superfamily protein (.1) AT2G38970 42 / 0.001 Zinc finger (C3HC4-type RING finger) family protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029886 [exp] 626 / 0 AT3G05545 258 / 2e-82 RING/U-box superfamily protein (.1) Lus10031491 [exp] 249 / 6e-79 AT3G05545 219 / 4e-67 RING/U-box superfamily protein (.1) Lus10040413 [exp] 46 / 6e-05 AT2G38970 846 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10023527 [exp] 44 / 0.0002 AT2G38970 887 / 0.0 Zinc finger (C3HC4-type RING finger) family protein (.1) Lus10033425 [exp] 42 / 0.0002 AT3G10910 82 / 6e-20 RING/U-box superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024700 [exp] 409 / 3e-141 AT3G05545 256 / 5e-81 RING/U-box superfamily protein (.1) Potri.013G015600 [exp] 408 / 1e-140 AT3G05545 291 / 1e-94 RING/U-box superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0229 [flax] [poplar] RING PF00097 [flax] [poplar] zf-C3HC4 Zinc finger, C3HC4 type (RING finger)
Representative CDS sequence Show only first row Show all	>Lus10020655 pacid=23140928 polypeptide=Lus10020655 locus=Lus10020655.g ID=Lus10020655.BGIv1.0 annot-version=v1.0 ATGGGATTGGGGAATAGTGAAAATGAATTGCTTGTCGACGACGGAGACGACGGTGGAGGAGGTCGAGGTGGGTATGGGAAGTCTTTGGCTGCTGTTTCGT GTTCGATTTGTCTGGAGGGTGTGACGGATACAGGGGATCGATCGTGGGCTAAGCTTCAATGCGGGCACCAATTCCATCTGGATTGCATTGGTTCAGCATT CAATATAAAGGGGGCAATGCAATGCCCTAACTGTCGTAAAATCGAGAAAGGCCAATGGCTCTATGCGAATGGTTGTCGATCGCTCCCTGAGATCAACATG GATGACTGGACCCATGATGAGGAAGTTTACTATAGCGTCTCCGAAGTGTCCCTTGGAGTTCATTATTGTCCTTTTAGTGGTAGCATGGCTAGACTACCTT CATCATTTGAGGAAGGGGAGTTCCCACCACATCCATATCACGATCTGCTCGGCCAACCTGCTGTGTTTGCTGAACATACGGCTGCTATATCATCCGCAAG TCACTCTTGCCCCTATGTTGCTTACTTTGGACCGGTCCACCCTTCGTCTTCAAGCTCCAGTGCCAGCGTTTCAGACGTTTCTAATTTCACCGGTCACTGG AACACTCCTCCATCCGACATGGCAAGTTCGTATGGCTTCCCCGCTGTGGATCTTCATTATCACAGCTGGGCGGAGCAGCATCACTCCCCTCCATTTTCCA CGACAAGCAGTCGCATTGGTGGAGGTGTTGATCAGCCTTCCCTCCCTCCCAACACTCAAAGAACAGCTCGAAACAGTATCGGTCATCAGAGAGGAGGAGG ATCGTTCATGCCCTTCTTCGTAAGCCCCAGTTCCGGGAGCTCGGTCCTTCCCACAGGTACTCCGACTTATCAAGGAAGCAATGCTAGGGCACGGGATCGA GTCCAGGCTCTTCAGGATTACTACCAGCAGCAGCAGCCGGGCAGTCCCCCGACCATACCGATACGAAGACCGAGCAGCCATAGGGGAGCAATAGCCTCGT CATCCGACCAGTCTGGGTTCTACTTCGTCCCTTCGGGGCGTAGTAGCAGCAATAACTACCAAGAAGCGGAGAATGTAGCTTCTCGTGCAAGGTTTCGGGC AGAGAGAGATTCTAGTTGGGGGGTTGCGTACCATCAAGGCAGTGGATCGGAGACGGGAATCAGATCCGGTAGCTACCGTCAGAGGCATCACGGGTCAGAA AGGGCGTCGCAGAACCGTCCGTAG
AA sequence Show only first row Show all	>Lus10020655 pacid=23140928 polypeptide=Lus10020655 locus=Lus10020655.g ID=Lus10020655.BGIv1.0 annot-version=v1.0 MGLGNSENELLVDDGDDGGGGRGGYGKSLAAVSCSICLEGVTDTGDRSWAKLQCGHQFHLDCIGSAFNIKGAMQCPNCRKIEKGQWLYANGCRSLPEINM DDWTHDEEVYYSVSEVSLGVHYCPFSGSMARLPSSFEEGEFPPHPYHDLLGQPAVFAEHTAAISSASHSCPYVAYFGPVHPSSSSSSASVSDVSNFTGHW NTPPSDMASSYGFPAVDLHYHSWAEQHHSPPFSTTSSRIGGGVDQPSLPPNTQRTARNSIGHQRGGGSFMPFFVSPSSGSSVLPTGTPTYQGSNARARDR VQALQDYYQQQQPGSPPTIPIRRPSSHRGAIASSSDQSGFYFVPSGRSSSNNYQEAENVASRARFRAERDSSWGVAYHQGSGSETGIRSGSYRQRHHGSE RASQNRP

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05545			RING/U-box superfamily protein...		Lus10020655 [exp]	0	1
AT3G61790			Protein with RING/U-box and TR...		Lus10004001 [exp]	2.4	0.9295
AT1G71860		ATPTP1, PTP1	protein tyrosine phosphatase 1...		Lus10006053 [exp]	4.2	0.9271
AT4G34700		CIB22, AtCIB22	B22 subunit of eukaryotic mito...		Lus10042049 [exp]	4.5	0.9027
AT1G78310			VQ motif-containing protein (....		Lus10036480 [exp]	4.9	0.9160
AT4G34840		ATMTN2, ATMTAN2	ARABIDOPSIS METHYLTHIOADENOSIN...		Lus10042387 [exp]	7.0	0.9063
AT5G18110		NCBP	novel cap-binding protein (.1)		Lus10005704 [exp]	7.7	0.8986
AT3G61790			Protein with RING/U-box and TR...		Lus10030248 [exp]	9.1	0.8565
AT4G30010			unknown protein		Lus10001443 [exp]	11.4	0.8981
AT2G25670			unknown protein		Lus10017738 [exp]	11.4	0.9131
AT2G19790			SNARE-like superfamily protein...		Lus10012924 [exp]	12.0	0.8890

Compare expression of checked genes

Lus10020655 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.