Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G02840 275 / 2e-91 ATSRP34, SR1, SR34, At-SR34 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) AT1G09140 274 / 2e-91 ATSRP30.1, ATSRP30.2, SR30, At-SR30 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) AT4G02430 256 / 3e-84 SR34b, At-SR34b Serine/Arginine-Rich Protein Splicing Factor 34b, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2) AT3G49430 245 / 2e-79 SRP34A, SR34a, At-SR34a Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) AT2G37340 74 / 1e-14 RSZ33, ATRSZ33, RS2Z33, AT-RS2Z33 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) AT3G53500 72 / 4e-14 RSZ32, RS2Z32, At-RS2Z arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) AT4G31580 60 / 2e-10 SRZ22, RSZP22, SRZ-22, RSZ22, At-RSZ22 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) AT3G61860 59 / 6e-10 ATRSP31, At-RS31 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1) AT2G24590 57 / 1e-09 RSZ22a, At-RSZ22a RS-containing zinc finger protein 22a, RNA recognition motif and CCHC-type zinc finger domains containing protein (.1) AT1G23860 56 / 2e-09 SRZ21, SRZ-21, RSZP21, RSZ21, At-RSZ21 RS-containing zinc finger protein 21 (.1.2.3.4)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029885 [exp] 410 / 2e-141 AT1G02840 253 / 2e-81 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10007869 [exp] 283 / 1e-94 AT1G02840 308 / 1e-105 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003606 [exp] 278 / 8e-93 AT1G02840 299 / 5e-102 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10032940 [exp] 249 / 7e-81 AT3G49430 328 / 7e-113 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10015564 [exp] 247 / 9e-81 AT3G49430 324 / 6e-112 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Lus10008218 [exp] 211 / 8e-66 AT1G02840 228 / 3e-73 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10030374 [exp] 148 / 7e-43 AT1G02840 147 / 8e-45 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Lus10003987 [exp] 69 / 9e-13 AT3G53500 255 / 2e-84 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2) Lus10015039 [exp] 69 / 9e-13 AT3G53500 256 / 8e-85 arginine/serine-rich zinc knuckle-containing protein 32, RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.1), RNA-binding (RRM/RBD/RNP motifs) family protein with retrovirus zinc finger-like domain (.2)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.013G015500 [exp] 304 / 1e-102 AT1G09140 263 / 7e-88 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.005G024600 [exp] 291 / 1e-97 AT1G09140 258 / 6e-86 Serine/Arginine-Rich Protein Splicing Factor 30, SERINE-ARGININE PROTEIN 30 (.1.2) Potri.014G129900 [exp] 276 / 7e-92 AT1G02840 272 / 5e-91 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.002G205025 [exp] 274 / 7e-91 AT1G02840 272 / 1e-90 Serine/Arginine-Rich Protein Splicing Factor 34, RNA-binding (RRM/RBD/RNP motifs) family protein (.1), RNA-binding (RRM/RBD/RNP motifs) family protein (.2), RNA-binding (RRM/RBD/RNP motifs) family protein (.3) Potri.015G004600 [exp] 244 / 9e-80 AT3G49430 303 / 1e-103 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.012G021800 [exp] 242 / 3e-78 AT3G49430 317 / 2e-108 Serine/Arginine-Rich Protein Splicing Factor 34a, SER/ARG-rich protein 34A (.1.2.3) Potri.016G081700 [exp] 77 / 9e-16 AT2G37340 268 / 2e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.006G215200 [exp] 75 / 4e-15 AT2G37340 266 / 6e-89 arginine/serine-rich zinc knuckle-containing protein 33 (.1.2.3) Potri.018G009100 [exp] 65 / 3e-12 AT4G31580 174 / 2e-55 RS-containing zinc finger protein 22, serine/arginine-rich 22 (.1.2) Potri.014G101800 [exp] 65 / 9e-12 AT3G61860 319 / 9e-111 arginine/serine-rich splicing factor 31, RNA-binding (RRM/RBD/RNP motifs) family protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0221 [flax] [poplar] RRM PF00076 [flax] [poplar] RRM_1 RNA recognition motif. (a.k.a. RRM, RBD, or RNP domain)
Representative CDS sequence Show only first row Show all	>Lus10020656 pacid=23140933 polypeptide=Lus10020656 locus=Lus10020656.g ID=Lus10020656.BGIv1.0 annot-version=v1.0 ATGAACGTTGAGTATAGCAGTAGCCTTCTCAACCGGCCACCTCGTATCTCGCCAAGTTTTTCCGACAGGAGATCGACACGTGTCCCAGGAGAAAAGAAGG CAACATTGGCTAACCATGTTCGAGAAGAATCCATTTCCTTATTCCCCCGCACTCAGACTCTTCCTCGATCATTCATTTCCCCTGCAACTTTGTTTTTTAT ATCTCAAATCTCTGTCAAAGGTCAGTTCTTTCCTCCTACCCTTTTGATCTTTACCCTGTCGAATGCGTTTTCCTTAAGCTTGGAAGGTCTGTGTTCATTT AGGGATTTTCTCTATTACTCTGGTTTTCTGGTGGGAACAAAGATGAGCAGGATTAGCCGTTCAAGCCGCACTCTTTACGTCGGCAATCTCCCTGGGGATA TCCGCTTGAGGGAGGTTGAAGATTTGTTCTACAAGTATGGTCCGATTGTGGACATCGACTTGAAAGTTCCTCCAAGGCCCCCAGGTTATGCCTTTGTTGA GTTTGAAGATCCTCGTGATGCTGAAGATGCAATCCATGGACGAGACGGGTATGACTTTGATGGACATCGCCTGCGTGTTGAACTTGCGCATGGAGGTCGG AGAAACTCATCACCAGCAGACCGACATGGCAGCAGTTACAGTAGCAGCAGTAGCCGGGGGCCCTCCAGACGCTCTGATTTTCGCGTTGTTGTCACCGGAT TGCCTTCTTCTGCTTCATGGCAAGACCTGAAGGATCATATGCGCCGAGCTGGCGATGTCTGCTTTTCTCAGGTCTACCGTGATCGTGGAGGCATGCGGGG CATTGTGGAGTACACAAACTATGATGATATGAAATATGCTCTTAGGAAGCTTGATGACACCGAATTTCGGAATACATTCTCTCGTGCCTACATACGGGTA CGAGAGGACTATGATGCAAGGAGCTACTCCAGAAGCCCGGATTACTCGAGGAGGAGCTATACCCCAAGTCCCGAGTACTCTAGGAGTCCCAGCCGCAGCC CCTATGCTCGGAGGAGTCGAAGCCGAAGTTATAGCTACAGTCCTAGAAGCAGGAGGTGA
AA sequence Show only first row Show all	>Lus10020656 pacid=23140933 polypeptide=Lus10020656 locus=Lus10020656.g ID=Lus10020656.BGIv1.0 annot-version=v1.0 MNVEYSSSLLNRPPRISPSFSDRRSTRVPGEKKATLANHVREESISLFPRTQTLPRSFISPATLFFISQISVKGQFFPPTLLIFTLSNAFSLSLEGLCSF RDFLYYSGFLVGTKMSRISRSSRTLYVGNLPGDIRLREVEDLFYKYGPIVDIDLKVPPRPPGYAFVEFEDPRDAEDAIHGRDGYDFDGHRLRVELAHGGR RNSSPADRHGSSYSSSSSRGPSRRSDFRVVVTGLPSSASWQDLKDHMRRAGDVCFSQVYRDRGGMRGIVEYTNYDDMKYALRKLDDTEFRNTFSRAYIRV REDYDARSYSRSPDYSRRSYTPSPEYSRSPSRSPYARRSRSRSYSYSPRSRR

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G02840		ATSRP34, SR1, S...	Serine/Arginine-Rich Protein S...		Lus10020656 [exp]	0	1
AT3G60690			SAUR-like auxin-responsive pro...		Lus10015879 [exp]	3.5	0.8876
AT3G01470	HD	HD-ZIP-1, HAT5,...	HOMEODOMAIN PROTEIN FROM ARABI...		Lus10022225 [exp]	5.7	0.8707
AT1G64090		RTNLB3	Reticulan like protein B3 (.1....		Lus10027548 [exp]	7.6	0.8132
AT4G32480			Protein of unknown function (D...		Lus10006177 [exp]	9.9	0.8656
AT3G52740			unknown protein		Lus10017046 [exp]	12.6	0.8594
AT4G27360			Dynein light chain type 1 fami...		Lus10038566 [exp]	12.7	0.8519
					Lus10038478 [exp]	17.3	0.8289
AT3G52930			Aldolase superfamily protein (...		Lus10027717 [exp]	17.9	0.8114
AT5G24120		ATSIG5, SIG5, S...	SIGMA FACTOR 5, sigma factor E...		Lus10038823 [exp]	18.4	0.8575
AT5G19855		AtRbcX2	homologue of cyanobacterial Rb...		Lus10030141 [exp]	18.9	0.8474

Compare expression of checked genes

Lus10020656 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.