Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT1G77170 543 / 0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT4G21065 296 / 3e-90 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) AT1G59720 295 / 2e-89 CRR28 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) AT5G44230 275 / 5e-82 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT5G48910 274 / 1e-81 LPA66 LOW PSII ACCUMULATION 66, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G36730 266 / 5e-80 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT2G02980 267 / 2e-79 OTP85 ORGANELLE TRANSCRIPT PROCESSING 85, Pentatricopeptide repeat (PPR) superfamily protein (.1) AT3G62890 265 / 6e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1) AT1G28590 259 / 7e-79 GDSL-like Lipase/Acylhydrolase superfamily protein (.1) AT5G06540 266 / 8e-79 Pentatricopeptide repeat (PPR) superfamily protein (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029884 [exp] 857 / 0 AT1G77170 543 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10013319 [exp] 296 / 2e-90 AT4G21065 744 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10005207 [exp] 292 / 4e-88 AT4G21065 741 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Lus10007341 [exp] 281 / 4e-85 AT2G42920 610 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10033026 [exp] 284 / 3e-84 AT1G08070 921 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10037229 [exp] 276 / 1e-83 AT1G59720 719 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Lus10010320 [exp] 278 / 2e-83 AT2G34400 658 / 0.0 Pentatricopeptide repeat (PPR-like) superfamily protein (.1) Lus10029344 [exp] 276 / 1e-82 AT5G06540 803 / 0.0 Pentatricopeptide repeat (PPR) superfamily protein (.1) Lus10030053 [exp] 275 / 5e-81 AT1G08070 884 / 0.0 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.006G164100 [exp] 611 / 0 AT1G77170 553 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.005G024300 [exp] 421 / 3e-141 AT5G03980 275 / 1e-90 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024900 [exp] 367 / 2e-120 AT5G03980 273 / 1e-89 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024933 [exp] 362 / 1e-118 AT5G03980 255 / 1e-82 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G024966 [exp] 362 / 2e-118 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.005G025000 [exp] 362 / 2e-118 AT5G03980 270 / 1e-88 SGNH hydrolase-type esterase superfamily protein (.1) Potri.013G103600 [exp] 311 / 2e-95 AT1G08070 477 / 7e-160 ORGANELLE TRANSCRIPT PROCESSING 82, EMBRYO DEFECTIVE 3102, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.017G001000 [exp] 298 / 1e-90 AT4G21065 793 / 0.0 Tetratricopeptide repeat (TPR)-like superfamily protein (.1), Tetratricopeptide repeat (TPR)-like superfamily protein (.2) Potri.018G092400 [exp] 296 / 2e-90 AT1G59720 810 / 0.0 CHLORORESPIRATORY REDUCTION28, Tetratricopeptide repeat (TPR)-like superfamily protein (.1) Potri.001G369900 [exp] 295 / 2e-89 AT5G66520 512 / 2e-175 Tetratricopeptide repeat (TPR)-like superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0264 [flax] [poplar] SGNH_hydrolase PF00657 [flax] [poplar] Lipase_GDSL GDSL-like Lipase/Acylhydrolase CL0020 [flax] [poplar] TPR PF01535 [flax] [poplar] PPR PPR repeat
Representative CDS sequence Show only first row Show all	>Lus10020657 pacid=23140910 polypeptide=Lus10020657 locus=Lus10020657.g ID=Lus10020657.BGIv1.0 annot-version=v1.0 ATGGCTAACTACTTCAGCATCATTCTCTGTCTCTGCCTCTCCTCTGTTTTCCACAGTCCCCTTCCCACGACCGGGTTACTCGTCCTTCCAAATCACTCTC TTTCGAAATGCCAGTTCGATGCAATCTATCAACTCGGAGATTCATCATCGGACACCGGAAATCTGATCCAACAGCATCCCGAATCGCCGTTCGCTCGCCT TCCATATGGAGAAACCTTCTTCTCCAAGAAACCAACCGGTCGTTGCTCGGATGGGTTGTTGATCATTGACTACCTTGCGATCTCAGCTGGCATTCCTCTC CTCGACCCGTACCTGAACCCGACCGCCAATCTGGTTCGTGGCCGCGGGGTCAATTTTGCGGTTGCTGGTTCGACCGCTCTCCCTACAAACGTTCTCTCGC AGAAGGGAATCTTTCCAATGATTACCAACACTTCTCTGAATGACCAGCTTGACTGGATGTTCACTCACTTCAACAGCATTTGTTACAGCCAACAAGATTG TGCGGAGAAGGTTAAGTCTGCGCTTTTTGTGGTTGGAGAGATCGGAAGGAGTGACTACATGTACGGACTCTATCAAGGCTTAACAATAGACGACGCAATG GCAATGGTTCCCGACGTGGTGGGAGAAGTTGCAAGTGCAATCACGAGAGTCATTTCGTATGGAGCAAGACGTATAGTCGTGCCGGGCCACCTCCCATTTG GTTGTTTGCCATTCTACCTAACCCAGTTCAAAACAAATGTTACATCATCGTACAACCGATTGAACTGCCTAAAGAAACCAAACACCCTCTCGATCACTCA CAATCGCAATCTCAAACAAGCCATCCAACAACTGAACAAGCAAAACCCTAACGTCACCATAGTCTATGGTGATCTGTATAGTGCTTACCACCGGATGCTC CGCCATTCGACGTCATTCGGTAGGTTGTTCCAGAAGGCATGTTGTGGAACTGGAGGAGATTACGAGTTCGATCCGAAGAGAACCTGCGGGGCAGTTGGGG TTCCGGTTTGCCCCGACCCGAGTCACTACATTAGTTGGGATGGAGTCCATCTTACACAAACTGCTTATCGAAAATCTCCGATAGTAACACCGCCGGAAGA TTATCCAGCTATCGCCATAGCATCTCAACTGTCCAGCTGCACTGATTTGCAGCAGCTAAATCAAATCTACGGCCACATTTTGCGAACGAACTTCCTTCAC TTCAATCCCGCTTCTTTCCAATGGAACAACGTGATAAGATCGTACACAAGATTAAACCGTCCAAGCCAAGCTCTACAGGTCTACGCATCAATGTCTCGAG CTGGGGTTTTTCCCGATTGCTACACGATCCCCATAGTCTTAAAATCTGCGAGCCAGATTCTTGCCGTTTGGGTTGGCGTGCAGATTCAGTCTGTAGCTGT GAAGATAGGGCTCGAATCGAACGAGTATTGCGAGAGTGGGTTCATTAGTCTGTACTCGAAGTGTGGGGAGTCTGATCTTGCACTCAAGGTGTTCGACGAA AGTCCTGAGAGAAAATTGGGATCTTGGAATGCGGCGATTGCTGGCCTTTGTCAGAGCGGGAGGGGAAAAGAGACGATTGAGATGTTTATCAAGATGATGA GATGTGGATTGCGGCCTGATGATGTTACTATGGTGAGCGTGACTTCTGCTTGCGGGAGTTTAGGTGATTTGCAGTTGGCTTTGCAGCTTCATAAATGTGT TCTCCAGGCTACCACCTCGGAAAAGTCCGATACTTTGATGTTGAATTCCTTGATCGATATGTACGGAAAATGTGGCAGGATGGACCTAGCGGACATGGTT TTCTCGTCAATGGAGGAGAAAAATCAAAATGTCTCGTCTTGGACGTCGATGATTGTTGGCTACGCAACACATGGACAAGTCGAGGAAGCTCTCGAATGCT TCAAGTCAATGAGGCAGCAGCCACGAATCCGGCCTAACCACGTGACATTCGTCGGAGTCCTGACCGCTTGTGTCCACGGTGGGAAGGTCGAAGAAGGGAA GTCGTATTTCGAAATGATGAAGAATGAGTACTCGTTGATGCCTCAGTTACAGCATTACGGATGCCTGGTCGATCTTCTCGGCCGAGTCGGGCTGCTAAAA GAAGCTAAAGAGGTCGTGGAAGGAATGTCGATGGAGCCTAACGTGGTCATATTCGGGTGTTTGATGGGCGCCTGTGAGAAGTATGCTAATGTGGAAATGG CGGAGTGGGTTGCTAAGCATTTGCAGAGGCTGGAGCCTTGGAACGACGGCGCTTTCGTGGTGTTGTCGAATGTTTATGCCAATAGAGGGATGTGGCGTGA GGTTGAGAATCTGAGGGTGGTCATGAAACAGAGGAGGTTAGAAAAGGTTCCAGCTTATAGCTTAGCAACTCGATGA
AA sequence Show only first row Show all	>Lus10020657 pacid=23140910 polypeptide=Lus10020657 locus=Lus10020657.g ID=Lus10020657.BGIv1.0 annot-version=v1.0 MANYFSIILCLCLSSVFHSPLPTTGLLVLPNHSLSKCQFDAIYQLGDSSSDTGNLIQQHPESPFARLPYGETFFSKKPTGRCSDGLLIIDYLAISAGIPL LDPYLNPTANLVRGRGVNFAVAGSTALPTNVLSQKGIFPMITNTSLNDQLDWMFTHFNSICYSQQDCAEKVKSALFVVGEIGRSDYMYGLYQGLTIDDAM AMVPDVVGEVASAITRVISYGARRIVVPGHLPFGCLPFYLTQFKTNVTSSYNRLNCLKKPNTLSITHNRNLKQAIQQLNKQNPNVTIVYGDLYSAYHRML RHSTSFGRLFQKACCGTGGDYEFDPKRTCGAVGVPVCPDPSHYISWDGVHLTQTAYRKSPIVTPPEDYPAIAIASQLSSCTDLQQLNQIYGHILRTNFLH FNPASFQWNNVIRSYTRLNRPSQALQVYASMSRAGVFPDCYTIPIVLKSASQILAVWVGVQIQSVAVKIGLESNEYCESGFISLYSKCGESDLALKVFDE SPERKLGSWNAAIAGLCQSGRGKETIEMFIKMMRCGLRPDDVTMVSVTSACGSLGDLQLALQLHKCVLQATTSEKSDTLMLNSLIDMYGKCGRMDLADMV FSSMEEKNQNVSSWTSMIVGYATHGQVEEALECFKSMRQQPRIRPNHVTFVGVLTACVHGGKVEEGKSYFEMMKNEYSLMPQLQHYGCLVDLLGRVGLLK EAKEVVEGMSMEPNVVIFGCLMGACEKYANVEMAEWVAKHLQRLEPWNDGAFVVLSNVYANRGMWREVENLRVVMKQRRLEKVPAYSLATR

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DESeq2's median of ratios [FLAX]

Order by: Tissue Experiment Show only core collection Show again Show schematic diagram

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT1G77170			Tetratricopeptide repeat (TPR)...		Lus10020657 [exp]	0	1
AT3G59530		LAP3	LESS ADHERENT POLLEN 3, Calciu...		Lus10008151 [exp]	7.5	0.9062
					Lus10005454 [exp]	12.1	0.8824
AT4G22780		ACR7	ACT domain repeat 7 (.1)		Lus10006662 [exp]	12.4	0.8657
AT5G51490			Plant invertase/pectin methyle...		Lus10031720 [exp]	16.6	0.8854
AT5G46220			Protein of unknown function (D...		Lus10038497 [exp]	17.1	0.8874
AT4G27290			S-locus lectin protein kinase ...		Lus10037736 [exp]	17.2	0.8274
					Lus10016571 [exp]	19.2	0.8904
AT3G47110			Leucine-rich repeat protein ki...		Lus10022863 [exp]	21.0	0.8476
AT3G50760		GATL2	galacturonosyltransferase-like...		Lus10016302 [exp]	21.7	0.8899
AT5G01180		ATPTR5	ARABIDOPSIS THALIANA PEPTIDE T...		Lus10035516 [exp]	22.2	0.8847

Compare expression of checked genes

Lus10020657 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.