Plant FIBer expression Database

External link	JGI Phytozome v13 [genome browser]
Symbol
Arabidopsis homologues Show only best Show top 10	Locus ID BLAST score/e-value TF class Alias TAIR10 short description AT3G05580 561 / 0 TOPP9 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G27840 561 / 0 TOPP8 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) AT2G39840 500 / 3e-177 TOPP4 type one serine/threonine protein phosphatase 4 (.1) AT5G59160 489 / 6e-173 PPO, TOPP2 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) AT2G29400 488 / 2e-172 PP1-AT, TOPP1 type one protein phosphatase 1 (.1) AT3G46820 487 / 4e-172 TOPP5 type one serine/threonine protein phosphatase 5 (.1) AT1G64040 478 / 2e-168 TOPP3 type one serine/threonine protein phosphatase 3 (.1) AT4G11240 469 / 7e-165 TOPP7 Calcineurin-like metallo-phosphoesterase superfamily protein (.1) AT5G43380 458 / 8e-161 TOPP6 type one serine/threonine protein phosphatase 6 (.1.2.3) AT3G05590 303 / 4e-102 RPL18 ribosomal protein L18 (.1)
Paralogs Show only best Show top 10	Gene ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Lus10029882 [exp] 628 / 0 AT3G05580 555 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10031489 [exp] 583 / 0 AT3G05580 565 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Lus10042559 [exp] 502 / 1e-177 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10022019 [exp] 502 / 2e-176 AT2G39840 565 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10004989 [exp] 495 / 2e-175 AT5G59160 565 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10004692 [exp] 491 / 8e-174 AT2G39840 596 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10016489 [exp] 491 / 1e-173 AT5G59160 570 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Lus10030163 [exp] 490 / 2e-173 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Lus10001025 [exp] 490 / 2e-173 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1)
Poplar homologues Show only best Show top 10	Locus ID BLAST score/e-value At best hit BLAST score/e-value TAIR10 short description Potri.005G024100 [exp] 563 / 0 AT5G27840 553 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1.2) Potri.013G014700 [exp] 561 / 0 AT3G05580 563 / 0.0 type one protein phosphatase 9, Calcineurin-like metallo-phosphoesterase superfamily protein (.1) Potri.013G045900 [exp] 505 / 5e-179 AT2G39840 564 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.019G018000 [exp] 499 / 1e-176 AT2G39840 554 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G245700 [exp] 493 / 2e-174 AT2G29400 556 / 0.0 type one protein phosphatase 1 (.1) Potri.009G037700 [exp] 492 / 4e-174 AT5G59160 553 / 0.0 PROTOPORPHYRINOGEN OXIDASE, type one serine/threonine protein phosphatase 2 (.1.2.3) Potri.008G060800 [exp] 491 / 6e-174 AT2G39840 594 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.010G197600 [exp] 490 / 1e-173 AT2G39840 602 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.008G166300 [exp] 485 / 4e-171 AT2G39840 545 / 0.0 type one serine/threonine protein phosphatase 4 (.1) Potri.001G098600 [exp] 480 / 2e-169 AT4G11240 582 / 0.0 Calcineurin-like metallo-phosphoesterase superfamily protein (.1)
PFAM info	Clan ID Clan name Pfam ID Pfam name Pfam description CL0163 [flax] [poplar] Calcineurin PF00149 [flax] [poplar] Metallophos Calcineurin-like phosphoesterase CL0588 [flax] [poplar] Ribos_L15p_L18e PF00828 [flax] [poplar] Ribosomal_L27A Ribosomal proteins 50S-L15, 50S-L18e, 60S-L27A
Representative CDS sequence Show only first row Show all	>Lus10020659 pacid=23140814 polypeptide=Lus10020659 locus=Lus10020659.g ID=Lus10020659.BGIv1.0 annot-version=v1.0 ATGGATACAGGCGTATTGGACGACATCATAAGGAGGTTGTTGGAAGGGAAAGGCGGGAAGCAGGTTCAGCTATCTGAGTCGGAGATCCGTCAATTGTGTG TTAATGCTCGCCAGATTTTCCTCTCCCAGCCTACTCTCCTCGAGATCAAAGCTCCCATTCGCATCTGCGGTGACATACACGGACAATATCAAGACCTATT GAGACTTTTCGAGTACGGTGGATACCCTCCAAGTGCAAACTATCTCTTCCTTGGAGACTATGTTGATAGAGGGAAGCAAAGCTTGGAGACCATATGCTTA CTTTTGGCCTACAAAATCAGATACCCGGATAAAGTCCACCTATTGAGAGGGAACCACGAGGACGCGAAGATCAACCGGATATATGGATTCTACGACGAAT GCAAGAGGAGATTCAACGTCAGGCTGTGGAAAATATTCACAGATTGTTTTAATTCATTGCCCGTGGCTGCACTGATCGACGAGAAGATACTTTGTATGCA CGGAGGACTATCTCCTGATATGGATCATTTGGATCAGATACGACACATTGAAAGGCCTACTGAGGTTCCGGACAGTGGCCTTCTTTGTGATCTGCTATGG TCCGATCCACACCCGACGAGCGAAGGATGGGGGGTTAGTGATCGAGGCGTTTCGAGTACCTTTGGAGCTGATGTAGTCGCTGAGTTTCTCGACAAAAATG ATCTTGATCTCATCTGCAGAGGGCATCAGGTGGTGGAAGATGGGTATGAGTTCTTCGCCCAGAGGCGGCTAGTCACGATCTTCTCAGCTCCTAACTATGG CGGGGAGTTCGACAACGCAGGTGCTCTATTGAGTGTCGACGAATCTCTGGTGTGTTCCTTCGAGATATTGAAACCAGCTACTTCAGCTAGCAGTTCAAGG ATGCCCCTTAAGAAGGGGATCGATTTGAAGGCAGGAGGTAAGAGGAAGAAGACCAAGCGCACGGCGCCAAAGTCGAACGATATCTACCTCAAGCTTCTGG TTAAGCTGTACCGATTCCTGGTGAGGAGAACTGGTAGTAGCTTCAATGCTGTGATATTGAAAAGGCTGTTTATGAGCAAGGTTAACAAGCCTCCGCTTTC CCTCTCCAGGCTCATTCGATTCACTAAAGGAAAGGAGGGAAAGATTGCTGTAGTTGTGGGAACAATCACGGATGATATCAGAGTTTATGACGTTCCAGCT ATAAAGGTTACTGCTTTGAGGTTCACTGAAACTGCCAGGGCTAGAATCGAAAAGGCTGGTGGTGAATGCTTGACTTTTGATCAGCTTGCTTTGAGGGCTC CTCTTGGCCAGAACACGGTTCTACTCCGAGGTCCCAAGAATGCTCGTGAGGCAGTGAAGCACTTTGGCCCAGCTCCAGGTGTGCCACACAGCCATACTAA GCCATATGTCAGGTCGAAGGGAAGGAAGTTCGAAAAGGCTAGAGGAAGAAGGAACAGTAGAGGATTTAGGGTTTAA
AA sequence Show only first row Show all	>Lus10020659 pacid=23140814 polypeptide=Lus10020659 locus=Lus10020659.g ID=Lus10020659.BGIv1.0 annot-version=v1.0 MDTGVLDDIIRRLLEGKGGKQVQLSESEIRQLCVNARQIFLSQPTLLEIKAPIRICGDIHGQYQDLLRLFEYGGYPPSANYLFLGDYVDRGKQSLETICL LLAYKIRYPDKVHLLRGNHEDAKINRIYGFYDECKRRFNVRLWKIFTDCFNSLPVAALIDEKILCMHGGLSPDMDHLDQIRHIERPTEVPDSGLLCDLLW SDPHPTSEGWGVSDRGVSSTFGADVVAEFLDKNDLDLICRGHQVVEDGYEFFAQRRLVTIFSAPNYGGEFDNAGALLSVDESLVCSFEILKPATSASSSR MPLKKGIDLKAGGKRKKTKRTAPKSNDIYLKLLVKLYRFLVRRTGSSFNAVILKRLFMSKVNKPPLSLSRLIRFTKGKEGKIAVVVGTITDDIRVYDVPA IKVTALRFTETARARIEKAGGECLTFDQLALRAPLGQNTVLLRGPKNAREAVKHFGPAPGVPHSHTKPYVRSKGRKFEKARGRRNSRGFRV

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DESeq2's median of ratios [FLAX]

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Coexpressed genes

Compare expression of checked genes Schematic diagram [FLAX] Schematic diagram [POPLAR]

*If you select 4 or less genes and then press "compare expression", expression will be shown as a graph. If you select more than 4 genes, expresion will be shown as a heat map.
*Color represents relative expression level among samples for each gene.

At best	At TF class	At alias	At description		Locus	MR	r	Symbol	HYP	R_s2_CTR	R_s2_Fox	R_s4_CTR	R_s4_Fox	R_r1_CTR	R_r1_Fox	R_r3_CTR	R_r3_Fox	R_r1s2_CTR	R_r1s2_Fox	R_r3s2_CTR	R_r3s2_Fox	R_s6_CTR	R_s6_Al4	R_s6_Al12	R_s6_Al24	R_s8_CTR	R_s8_Al4	R_s8_Al12	R_s8_Al24	R_r5_CTR	R_r5_Al4	R_r5_Al12	R_r5_Al24	R_r7_CTR	R_r7_Al4	R_r7_Al12	R_r7_Al24	LEAF_N	LEAF_P	LEAF_NPK	SAM	AR_Bet	AR_rdf	cPAR	TOP_Bet	TOP_rdf	iFIBa	iFIBb	MID_Bet	MID_rdf	tFIBa	tFIB_Gr	tFIB_Li	tFIB_Bi	tFIBb	tFIBb_PUL8	tFIBb_PUL24	tFIBb_PUL96	tFIBb_OPP8	tFIBb_OPP24	tFIBb_OPP96	sXYLa	sXYLb	sXYLb_PUL8	sXYLb_PUL24	sXYLb_PUL96	sXYLb_OPP8	sXYLb_OPP24	sXYLb_OPP96
AT3G05580		TOPP9	type one protein phosphatase 9...		Lus10020659 [exp]	0	1
AT2G19590		ATACO1, ACO1	ACC oxidase 1 (.1)		Lus10008564 [exp]	4.0	0.8833
AT2G45060			Uncharacterised conserved prot...		Lus10028177 [exp]	15.3	0.8715
AT1G65030			Transducin/WD40 repeat-like su...		Lus10038299 [exp]	15.6	0.8821
AT3G55010		EMB2818, ATPURM...	EMBRYO DEFECTIVE 2818, phospho...		Lus10024142 [exp]	16.9	0.8768
AT3G03050		RHD7, ATCSLD3, ...	ROOT HAIR DEFECTIVE 7, KOJAK, ...		Lus10030455 [exp]	16.9	0.8709
AT5G17770		CBR1, ATCBR	NADH:cytochrome B5 reductase 1...		Lus10020310 [exp]	20.7	0.8730
AT5G57290			60S acidic ribosomal protein f...		Lus10010890 [exp]	25.2	0.8758
AT3G57280			Transmembrane proteins 14C (.1...		Lus10031047 [exp]	33.3	0.8093
AT4G00585			unknown protein		Lus10012175 [exp]	40.5	0.8589
AT3G53630			unknown protein		Lus10023752 [exp]	40.5	0.8694

Compare expression of checked genes

Lus10020659 coexpression network

*The number of genes in the network is adjusted within 50 genes.
*Gene name represents symbol(s) of closest Arabidopsis gene if symbol(s) for the gene itself doesn't exist.
*Circle diameter represents the number of connection with other genes within this network.
*Color for gene name represents subnetwork based on the result of network clustering.